EBG00000313339 - n.2814G>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
0 Sensitive
5 RR-TB
1 HR-TB
6 MDR-TB
0 Pre-XDR-TB
84 XDR-TB
9 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 58 |
| lineage3.1.2.1 | 1 |
| lineage2.2.2 | 10 |
| lineage2.2.1.1 | 1 |
| lineage4.3.3 | 5 |
| lineage2.2.1;lineage4.1.2.1 | 1 |
| lineage4.9 | 8 |
| lineage4.4.1.1.1 | 3 |
| lineage4.1.2.1 | 5 |
| lineage4.8.2 | 1 |
| lineage2.2.1;lineage3.1.2 | 2 |
| lineage2.2.1;lineage3 | 1 |
| lineage4.4.1.1 | 3 |
| lineage4.1.1.3 | 1 |
| lineage3 | 1 |
| lineage1.2.2.2;lineage2.2.1 | 1 |
| lineage2.2.1.2;lineage3.1.2.1 | 1 |
| lineage4.3.2.1 | 1 |
| lineage4.8.2;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 105 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR28888063 | XDR-TB | lineage2.2.1 | None | SRR28351484 | XDR-TB | lineage2.2.1 | None | ERR13262168 | XDR-TB | lineage2.2.1 | None | ERR789235 | XDR-TB | lineage2.2.1 | None | ERR4796488 | XDR-TB | lineage2.2.1 | in | ERR4796910 | XDR-TB | lineage3.1.2.1 | in | ERR2510360 | XDR-TB | lineage2.2.1 | it | ERR13286181 | XDR-TB | lineage2.2.2 | None | ERR13286103 | XDR-TB | lineage2.2.2 | None | ERR4799657 | XDR-TB | lineage2.2.1.1 | None | ERR4822335 | XDR-TB | lineage2.2.1 | None | ERR8025676 | XDR-TB | lineage2.2.2 | None | ERR11774899 | XDR-TB | lineage2.2.1 | None | SRR7517690 | XDR-TB | lineage2.2.1 | None | SRR10315630 | MDR-TB | lineage4.3.3 | None | ERR789234 | XDR-TB | lineage2.2.1 | None | ERR13288941 | XDR-TB | lineage2.2.2 | None | SRR25827368 | XDR-TB | lineage2.2.1;lineage4.1.2.1 | None | SRR7829590 | XDR-TB | lineage2.2.1 | None | SRR18002927 | XDR-TB | lineage2.2.1 | None | SRR18002960 | XDR-TB | lineage2.2.1 | None | SRR8692811 | Other | lineage4.9 | None | SRR11349138 | MDR-TB | lineage4.4.1.1.1 | None | ERR8025674 | XDR-TB | lineage2.2.2 | None | SRR28888064 | XDR-TB | lineage2.2.1 | None | ERR8025675 | XDR-TB | lineage2.2.2 | None | ERR789238 | XDR-TB | lineage2.2.1 | None | SRR28888056 | XDR-TB | lineage2.2.1 | None | SRR25827446 | XDR-TB | lineage2.2.1 | None | SRR9971235 | XDR-TB | lineage4.4.1.1.1 | None | ERR2510459 | XDR-TB | lineage2.2.1 | it | ERR789236 | XDR-TB | lineage2.2.1 | None | SRR11349137 | RR-TB | lineage4.4.1.1.1 | None | SRR10315674 | MDR-TB | lineage2.2.1 | None | ERR4798617 | XDR-TB | lineage2.2.1 | in | ERR13289399 | XDR-TB | lineage2.2.2 | None | ERR4799830 | XDR-TB | lineage2.2.1 | in | ERR4799131 | HR-TB | lineage2.2.1 | in | ERR4799508 | XDR-TB | lineage2.2.1 | in | ERR4800060 | XDR-TB | lineage4.1.2.1 | in | SRR10380194 | XDR-TB | lineage2.2.1 | None | SRR28888070 | XDR-TB | lineage2.2.1 | None | SRR13180208 | XDR-TB | lineage2.2.1 | None | ERR11068468 | XDR-TB | lineage2.2.1 | None | ERR13262011 | XDR-TB | lineage2.2.1 | None | SRR5007169 | RR-TB | lineage4.8.2 | None | SRR8692785 | Other | lineage4.9 | None | SRR25827781 | XDR-TB | lineage2.2.1 | None | SRR25827304 | XDR-TB | lineage2.2.1;lineage3.1.2 | None | ERR4872293 | XDR-TB | lineage2.2.1 | None | SRR11349152 | XDR-TB | lineage4.3.3 | None | SRR9971039 | XDR-TB | lineage4.3.3 | None | SRR29385458 | XDR-TB | lineage2.2.1 | None | SRR25827487 | XDR-TB | lineage2.2.1;lineage3 | None | SRR22137416 | XDR-TB | lineage2.2.1 | None | ERR13266571 | XDR-TB | lineage2.2.1 | None | SRR8692878 | Other | lineage4.9 | None | SRR8692852 | Other | lineage4.9 | None | SRR9970996 | XDR-TB | lineage4.4.1.1 | None | SRR9971101 | XDR-TB | lineage4.1.2.1 | None | SRR9970995 | XDR-TB | lineage4.3.3 | None | SRR8692855 | Other | lineage4.9 | None | SRR9971105 | XDR-TB | lineage4.4.1.1 | None | SRR11349150 | MDR-TB | lineage4.1.1.3 | None | ERR4796503 | XDR-TB | lineage3 | in | SRR14782715 | XDR-TB | lineage2.2.1 | None | ERR4872264 | XDR-TB | lineage2.2.1 | None | ERR4872303 | XDR-TB | lineage2.2.1 | None | SRR8692850 | Other | lineage4.9 | None | SRR8692877 | Other | lineage4.9 | None | ERR11774900 | XDR-TB | lineage2.2.1 | None | SRR28888078 | XDR-TB | lineage2.2.1 | None | SRR25827547 | XDR-TB | lineage2.2.1;lineage3.1.2 | None | SRR25827479 | XDR-TB | lineage1.2.2.2;lineage2.2.1 | None | SRR25827439 | XDR-TB | lineage2.2.1.2;lineage3.1.2.1 | None | SRR9971052 | MDR-TB | lineage4.4.1.1 | None | ERR7362017 | XDR-TB | lineage2.2.1 | None | SRR24710276 | XDR-TB | lineage2.2.1 | None | ERR4831167 | XDR-TB | lineage2.2.1 | de | ERR978256 | XDR-TB | lineage2.2.1 | None | SRR21001882 | XDR-TB | lineage2.2.1 | None | SRR29385372 | XDR-TB | lineage2.2.2 | None | ERR9992721 | XDR-TB | lineage2.2.2 | None | SRR10315499 | MDR-TB | lineage2.2.1 | None | ERR4830889 | XDR-TB | lineage2.2.1 | None | SRR28888067 | XDR-TB | lineage2.2.1 | None | SRR11349135 | XDR-TB | lineage4.3.3 | None | SRR11349148 | RR-TB | lineage2.2.1 | None | SRR11349149 | RR-TB | lineage2.2.1 | None | SRR21001883 | XDR-TB | lineage2.2.1 | None | SRR10315658 | RR-TB | lineage4.3.2.1 | None | SRR5007168 | Other | lineage4.8.2;lineage4.9 | None | SRR8692861 | Other | lineage4.9 | None | ERR4798457 | XDR-TB | lineage2.2.1 | in | SRR7781508 | XDR-TB | lineage4.1.2.1 | None | ERR11138659 | XDR-TB | lineage2.2.2 | None | ERR11774895 | XDR-TB | lineage2.2.1 | None | ERR4800048 | XDR-TB | lineage4.1.2.1 | in | ERR11774897 | XDR-TB | lineage2.2.1 | None | SRR25827490 | XDR-TB | lineage2.2.1 | None | SRR28888065 | XDR-TB | lineage2.2.1 | None | SRR28351354 | XDR-TB | lineage2.2.1 | None | ERR12916925 | XDR-TB | lineage2.2.1 | None | ERR4828788 | XDR-TB | lineage4.1.2.1 | None | ERR13266572 | XDR-TB | lineage2.2.1 | None |
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