TB-Profiler result

Run: SRR8692811
Summary

Run ID: SRR8692811

Sample name:

Date: 13-08-2023 22:06:33

Number of reads: NA

Percentage reads mapped: NA

Strain: lineage4.9

Drug-resistance: Other

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rrl 1476471 n.2814G>T non_coding_transcript_exon_variant 0.56 linezolid
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
Rv1258c 1406686 p.Val219Ile missense_variant 1.0
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1472948 n.1103C>A non_coding_transcript_exon_variant 0.12
rrl 1474673 n.1016T>C non_coding_transcript_exon_variant 0.12
rrl 1474753 n.1096A>G non_coding_transcript_exon_variant 0.25
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 0.25
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.21
rrl 1474812 n.1155G>A non_coding_transcript_exon_variant 0.14
rrl 1474830 n.1173A>G non_coding_transcript_exon_variant 0.11
rrl 1475315 n.1658A>C non_coding_transcript_exon_variant 0.11
rrl 1475358 n.1701T>C non_coding_transcript_exon_variant 0.12
rrl 1475380 n.1723C>A non_coding_transcript_exon_variant 0.12
rrl 1475382 n.1725A>C non_coding_transcript_exon_variant 0.12
rrl 1475395 n.1738T>G non_coding_transcript_exon_variant 0.12
rrl 1475396 n.1739C>G non_coding_transcript_exon_variant 0.12
rrl 1475397 n.1740G>T non_coding_transcript_exon_variant 0.13
rrl 1475402 n.1745C>T non_coding_transcript_exon_variant 0.12
rrl 1475419 n.1762C>T non_coding_transcript_exon_variant 0.12
rrl 1475429 n.1772G>A non_coding_transcript_exon_variant 0.12
rrl 1475698 n.2041G>T non_coding_transcript_exon_variant 0.13
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.15
rrl 1475991 n.2334T>C non_coding_transcript_exon_variant 0.16
rrl 1475995 n.2338G>A non_coding_transcript_exon_variant 0.16
rrl 1476030 n.2373A>G non_coding_transcript_exon_variant 0.1
rrl 1476034 n.2377C>G non_coding_transcript_exon_variant 0.11
rrl 1476035 n.2378G>C non_coding_transcript_exon_variant 0.11
rrl 1476044 n.2387T>G non_coding_transcript_exon_variant 0.1
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 0.13
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.11
rrl 1476433 n.2776C>A non_coding_transcript_exon_variant 0.12
rrl 1476529 n.2872A>G non_coding_transcript_exon_variant 0.18
rrl 1476583 n.2926G>C non_coding_transcript_exon_variant 0.14
rrl 1476597 n.2940G>A non_coding_transcript_exon_variant 0.16
rrl 1476608 n.2951C>G non_coding_transcript_exon_variant 0.14