Rv2043c - p.Met1?
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
0 Sensitive
1 RR-TB
2 HR-TB
86 MDR-TB
84 Pre-XDR-TB
29 XDR-TB
11 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 119 |
| lineage4.2.2 | 8 |
| lineage4.6.2.2 | 1 |
| lineage1.1.2 | 3 |
| lineage4.3.4.2 | 34 |
| lineage4.5 | 1 |
| lineage3 | 9 |
| lineage4.1.4 | 8 |
| lineage4.1.1.3 | 1 |
| lineage4.3.2 | 4 |
| lineage4.3.4.1 | 2 |
| lineage4.3.3 | 2 |
| lineage4.4.2 | 4 |
| lineage2.2.1.1 | 1 |
| lineage1.2.2.2 | 3 |
| lineage1.2.1.2 | 1 |
| lineage3.1.2 | 1 |
| lineage4.8 | 1 |
| lineage2.1 | 2 |
| lineage4.2.2.2 | 1 |
| lineage4.1.2.1 | 1 |
| lineage4.9 | 1 |
| lineage2.2.1;lineage4 | 1 |
| 1 | |
| lineage2.2.1;lineage3 | 1 |
| lineage4.2.1 | 1 |
| lineage1.2.1.2.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 213 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR11243534 | Pre-XDR-TB | lineage2.2.1 | None | SRR13232468 | Pre-XDR-TB | lineage2.2.1 | None | ERR11081308 | MDR-TB | lineage2.2.1 | None | ERR5865685 | Pre-XDR-TB | lineage2.2.1 | None | SRR29539759 | Pre-XDR-TB | lineage2.2.1 | None | ERR8665689 | Pre-XDR-TB | lineage2.2.1 | None | DRR188872 | Other | lineage4.2.2 | None | SRR10303351 | MDR-TB | lineage2.2.1 | None | ERR16022312 | Pre-XDR-TB | lineage2.2.1 | None | SRR5535785 | Pre-XDR-TB | lineage4.6.2.2 | None | SRR10500305 | MDR-TB | lineage1.1.2 | None | ERR275230 | XDR-TB | lineage4.3.4.2 | pt | SRR1172219 | Pre-XDR-TB | lineage2.2.1 | None | SRR15316442 | MDR-TB | lineage2.2.1 | None | ERR13252402 | Other | lineage4.2.2 | None | ERR4827599 | Pre-XDR-TB | lineage2.2.1 | None | ERR5866396 | Pre-XDR-TB | lineage2.2.1 | None | ERR1664638 | XDR-TB | lineage4.3.4.2 | None | ERR11081310 | MDR-TB | lineage2.2.1 | None | ERR4822369 | Pre-XDR-TB | lineage4.5 | None | SRR25827618 | Pre-XDR-TB | lineage3 | None | ERR9119638 | MDR-TB | lineage4.1.4 | None | SRR28045691 | XDR-TB | lineage4.1.1.3 | None | SRR28706399 | MDR-TB | lineage2.2.1 | None | SRR27069380 | Pre-XDR-TB | lineage2.2.1 | None | SRR27069369 | MDR-TB | lineage2.2.1 | None | ERR4831820 | MDR-TB | lineage2.2.1 | vn | ERR2707157 | MDR-TB | lineage4.3.2 | cd | ERR7911486 | Pre-XDR-TB | lineage2.2.1 | vn | DRR473866 | Other | lineage4.2.2 | None | SRR10305619 | Pre-XDR-TB | lineage2.2.1 | None | SRR15399227 | Other | lineage4.3.4.1 | None | ERR2653114 | Pre-XDR-TB | lineage4.3.4.2 | None | ERR2510282 | Pre-XDR-TB | lineage3 | pk | ERR1034850 | XDR-TB | lineage4.3.4.2 | pt | ERR2653105 | Pre-XDR-TB | lineage4.3.4.2 | None | SRR29050880 | Pre-XDR-TB | lineage4.3.4.2 | None | ERR5865285 | Pre-XDR-TB | lineage2.2.1 | None | DRR188768 | Other | lineage4.2.2 | None | ERR1664636 | XDR-TB | lineage4.3.4.2 | None | ERR5865805 | MDR-TB | lineage4.3.3 | None | SRR10040141 | MDR-TB | lineage4.4.2 | None | SRR10808670 | Pre-XDR-TB | lineage4.3.2 | None | SRR3082116 | MDR-TB | lineage2.2.1 | None | SRR25207333 | Pre-XDR-TB | lineage4.4.2 | None | ERR1034633 | XDR-TB | lineage4.3.4.2 | None | SRR1169121 | Pre-XDR-TB | lineage2.2.1 | None | SRR27069367 | XDR-TB | lineage2.2.1 | None | ERR4872056 | MDR-TB | lineage4.1.4 | None | SRR23938596 | Pre-XDR-TB | lineage2.2.1 | None | ERR2307640 | MDR-TB | lineage2.2.1 | None | SRR10430335 | MDR-TB | lineage2.2.1 | None | ERR3273207 | MDR-TB | lineage2.2.1.1 | None | SRR27069383 | Pre-XDR-TB | lineage2.2.1 | None | ERR2653100 | Pre-XDR-TB | lineage4.3.4.2 | None | SRR29017003 | MDR-TB | lineage4.3.4.1 | None | ERR4829855 | Pre-XDR-TB | lineage2.2.1 | None | ERR11243532 | Pre-XDR-TB | lineage2.2.1 | None | SRR1159954 | Pre-XDR-TB | lineage2.2.1 | None | SRR28240163 | Pre-XDR-TB | lineage2.2.1 | None | SRR29914428 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865806 | MDR-TB | lineage4.3.3 | None | ERR2653149 | MDR-TB | lineage4.3.4.2 | None | SRR18003047 | MDR-TB | lineage2.2.1 | None | SRR29385474 | Pre-XDR-TB | lineage2.2.1 | None | SRR29539651 | Pre-XDR-TB | lineage2.2.1 | None | SRR29016837 | MDR-TB | lineage1.2.2.2 | None | SRR29539708 | MDR-TB | lineage2.2.1 | None | SRR023477 | HR-TB | lineage2.2.1 | None | SRR6785386 | MDR-TB | lineage2.2.1 | None | ERR13284790 | MDR-TB | lineage2.2.1 | None | ERR550785 | MDR-TB | lineage2.2.1 | None | ERR11243533 | Pre-XDR-TB | lineage2.2.1 | None | ERR550677 | MDR-TB | lineage2.2.1 | None | SRR1180936 | Pre-XDR-TB | lineage2.2.1 | None | ERR13260931 | MDR-TB | lineage3 | None | ERR1664640 | XDR-TB | lineage4.3.4.2 | None | SRR18714875 | Pre-XDR-TB | lineage2.2.1 | None | ERR1034908 | XDR-TB | lineage4.3.4.2 | pt | ERR13284778 | MDR-TB | lineage2.2.1 | None | SRR1723558 | MDR-TB | lineage2.2.1 | None | DRR454965 | MDR-TB | lineage2.2.1 | None | ERR4799586 | Pre-XDR-TB | lineage3 | in | ERR4797814 | Pre-XDR-TB | lineage3 | in | ERR550784_ERR550785 | MDR-TB | lineage2.2.1 | None | SRR30182833 | MDR-TB | lineage1.2.1.2 | None | ERR275203 | XDR-TB | lineage4.3.4.2 | pt | ERR5865686 | Pre-XDR-TB | lineage2.2.1 | None | ERR13284018 | MDR-TB | lineage2.2.1 | None | ERR13261374 | Pre-XDR-TB | lineage2.2.1 | None | SRR25827444 | XDR-TB | lineage3 | None | ERR9119466 | MDR-TB | lineage4.1.4 | None | SRR28393595 | MDR-TB | lineage2.2.1 | None | SRR11662227 | MDR-TB | lineage2.2.1 | None | ERR8665612 | Pre-XDR-TB | lineage2.2.1 | None | ERR4829939 | MDR-TB | lineage3 | pk | ERR8665817 | Pre-XDR-TB | lineage2.2.1 | None | SRR11662181 | MDR-TB | lineage2.2.1 | None | SRR11786873 | MDR-TB | lineage2.2.1 | None | ERR9657180 | Other | lineage3.1.2 | None | ERR1664637 | XDR-TB | lineage4.3.4.2 | None | SAMEA2533466 | MDR-TB | lineage2.2.1 | uz | SAMEA2533559 | MDR-TB | lineage2.2.1 | uz | ERR2515926 | MDR-TB | lineage4.8 | za | SRR11828992 | Pre-XDR-TB | lineage2.1 | th | SRR5709866 | Pre-XDR-TB | lineage4.4.2 | th | SRR5710022 | Pre-XDR-TB | lineage2.1 | th | SRR5709907 | MDR-TB | lineage2.2.1 | th | SRR6824464 | Pre-XDR-TB | lineage2.2.1 | cn | SRR6824467 | Pre-XDR-TB | lineage2.2.1 | cn | SRR6824577 | Pre-XDR-TB | lineage2.2.1 | cn | ERR8665715 | Pre-XDR-TB | lineage2.2.1 | None | ERR1035226 | XDR-TB | lineage4.3.4.2 | pt | SRR27069419 | Pre-XDR-TB | lineage2.2.1 | None | ERR8665508 | Pre-XDR-TB | lineage2.2.1 | None | SRR6257010 | MDR-TB | lineage2.2.1 | None | ERR8665688 | Pre-XDR-TB | lineage2.2.1 | None | DRR474096 | Other | lineage4.2.2 | None | SRR1163325 | Pre-XDR-TB | lineage2.2.1 | None | ERR8665509 | Pre-XDR-TB | lineage2.2.1 | None | ERR4553861 | MDR-TB | lineage1.2.2.2 | None | SRR1723557 | Pre-XDR-TB | lineage2.2.1 | cn | SRR1723556 | Pre-XDR-TB | lineage2.2.1 | cn | ERR13230597 | Other | lineage4.2.2 | None | ERR9119557 | MDR-TB | lineage4.1.4 | None | SRR29051561 | MDR-TB | lineage4.3.4.2 | None | DRR473867 | Other | lineage4.2.2 | None | SRR29914427 | XDR-TB | lineage2.2.1 | None | ERR1034885 | XDR-TB | lineage4.3.4.2 | pt | ERR5865287 | Pre-XDR-TB | lineage2.2.1 | None | ERR13267029 | Pre-XDR-TB | lineage2.2.1 | None | ERR11081824 | MDR-TB | lineage2.2.1 | None | ERR4872246 | MDR-TB | lineage4.1.4 | None | SRR1723559 | Pre-XDR-TB | lineage2.2.1 | None | SRR21576735 | MDR-TB | lineage2.2.1 | None | SRR28706563 | Pre-XDR-TB | lineage2.2.1 | None | ERR8665714 | Pre-XDR-TB | lineage2.2.1 | None | SRR6257070 | MDR-TB | lineage2.2.1 | None | ERR550784 | MDR-TB | lineage2.2.1 | None | SRR22873610 | Pre-XDR-TB | lineage2.2.1 | None | ERR11068988 | MDR-TB | lineage4.3.4.2 | None | ERR11080912 | MDR-TB | lineage2.2.1 | None | ERR2510542 | MDR-TB | lineage3 | pk | ERR9119504 | MDR-TB | lineage4.1.4 | None | SRR29539106 | Pre-XDR-TB | lineage2.2.1 | None | SRR29017577 | MDR-TB | lineage1.2.2.2 | None | ERR13284771 | MDR-TB | lineage4.3.4.2 | None | ERR2184354 | Pre-XDR-TB | lineage4.3.2 | pe | ERR5866394 | Pre-XDR-TB | lineage2.2.1 | None | ERR5866395 | Pre-XDR-TB | lineage2.2.1 | None | ERR4798798 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798314 | Pre-XDR-TB | lineage4.2.2.2 | in | ERR1664650 | XDR-TB | lineage4.3.4.2 | None | ERR1664635 | XDR-TB | lineage4.3.4.2 | None | ERR1664660 | XDR-TB | lineage4.3.4.2 | None | ERR1664652 | XDR-TB | lineage4.3.4.2 | None | ERR1664662 | XDR-TB | lineage4.3.4.2 | None | ERR1664642 | XDR-TB | lineage4.3.4.2 | None | ERR4810969 | MDR-TB | lineage2.2.1 | cn | ERR2864241 | XDR-TB | lineage4.3.4.2 | pt | SRR25207246 | MDR-TB | lineage2.2.1 | None | ERR4811353 | Pre-XDR-TB | lineage4.4.2 | cn | SRR25207218 | MDR-TB | lineage2.2.1 | None | SRR28045449 | Pre-XDR-TB | lineage3 | None | SRR27069390 | MDR-TB | lineage2.2.1 | None | SRR28706474 | Pre-XDR-TB | lineage2.2.1 | None | SRR1163145 | Pre-XDR-TB | lineage2.2.1 | None | ERR4813910 | MDR-TB | lineage4.1.2.1 | None | ERR4831463 | MDR-TB | lineage1.1.2 | None | ERR4831795 | MDR-TB | lineage2.2.1 | vn | ERR4872098 | MDR-TB | lineage4.1.4 | None | SRR16088333 | Pre-XDR-TB | lineage2.2.1 | None | SRR1159760 | Pre-XDR-TB | lineage2.2.1 | None | SRR5485453 | RR-TB | lineage4.9 | None | ERR2510666 | Pre-XDR-TB | lineage2.2.1 | it | ERR550914 | MDR-TB | lineage2.2.1 | None | ERR8665510 | Other | lineage2.2.1;lineage4 | None | SRR16370527 | Pre-XDR-TB | lineage2.2.1 | None | SRR5152919 | Pre-XDR-TB | lineage2.2.1 | None | ERR2652999 | Pre-XDR-TB | lineage4.3.4.2 | None | ERR1035215 | XDR-TB | lineage4.3.4.2 | pt | ERR1035222 | XDR-TB | lineage4.3.4.2 | pt | ERR1034847 | XDR-TB | lineage4.3.4.2 | pt | SAMN02419548 | Pre-XDR-TB | lineage2.2.1 | by | SAMN02419662 | Pre-XDR-TB | lineage2.2.1 | by | ERR4553495 | MDR-TB | None | SRR026442 | MDR-TB | lineage2.2.1 | None | ERR4872155 | MDR-TB | lineage4.1.4 | None | ERR4828001 | MDR-TB | lineage2.2.1 | None | SRR27069433 | Pre-XDR-TB | lineage2.2.1 | None | ERR550915 | MDR-TB | lineage2.2.1 | None | SRR13583376 | MDR-TB | lineage4.3.4.2 | None | SRR20969545 | Pre-XDR-TB | lineage2.2.1 | None | SRR21276921 | MDR-TB | lineage2.2.1 | None | SRR5073787 | MDR-TB | lineage2.2.1 | vn | SRR5818699 | MDR-TB | lineage1.1.2 | dj | ERR10748418 | MDR-TB | lineage2.2.1 | None | SRR25207229 | MDR-TB | lineage2.2.1 | None | SRR1183962 | Pre-XDR-TB | lineage2.2.1 | None | ERR2984797 | XDR-TB | lineage4.3.4.2 | None | SRR6785277 | HR-TB | lineage2.2.1 | None | ERR10748300 | MDR-TB | lineage2.2.1 | None | ERR1664639 | XDR-TB | lineage4.3.4.2 | None | SRR29230792 | MDR-TB | lineage4.3.2 | None | SRR25827513 | XDR-TB | lineage2.2.1;lineage3 | None | ERR4827938 | MDR-TB | lineage4.2.1 | None | SRR28467062 | MDR-TB | lineage2.2.1 | None | SRR6930919 | MDR-TB | lineage1.2.1.2.1 | None | ERR5865286 | Pre-XDR-TB | lineage2.2.1 | None | ERR13248882 | Other | lineage4.2.2 | None | ERR550914_ERR550915 | MDR-TB | lineage2.2.1 | None | ERR1815555 | XDR-TB | lineage4.3.4.2 | None | SRR29681401 | MDR-TB | lineage2.2.1 | None |
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