Run ID: ERR2510820
Sample name:
Date: 31-03-2023 18:57:29
Number of reads: 1574714
Percentage reads mapped: 78.89
Strain: lineage4.8
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.8 | Euro-American (mainly T) | T1;T2;T3;T5 | RD219 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rrs | 1472733 | n.888G>A | non_coding_transcript_exon_variant | 0.15 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7523 | c.222C>A | synonymous_variant | 0.12 |
rpoC | 766085 | p.Pro906Ala | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 778108 | p.Ser125Ala | missense_variant | 1.0 |
mmpR5 | 778166 | c.-824G>T | upstream_gene_variant | 0.17 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1303595 | p.Leu222Pro | missense_variant | 1.0 |
fbiC | 1303743 | c.813C>A | synonymous_variant | 1.0 |
atpE | 1460992 | c.-53A>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472160 | n.315C>T | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472177 | n.332C>T | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472235 | n.390G>C | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472251 | n.406G>A | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472258 | n.413A>G | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472259 | n.414C>A | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472274 | n.429A>G | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472382 | n.537G>A | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472389 | n.544G>A | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472390 | n.545T>A | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472391 | n.546C>T | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472522 | n.677T>G | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472530 | n.685G>A | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472537 | n.692C>T | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472544 | n.699C>A | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472545 | n.700A>T | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472566 | n.721G>A | non_coding_transcript_exon_variant | 0.31 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 0.35 |
rrs | 1472579 | n.734G>T | non_coding_transcript_exon_variant | 0.23 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 0.28 |
rrs | 1472598 | n.753A>C | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472599 | n.754G>T | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472767 | n.922G>C | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472887 | n.1042G>C | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472956 | n.1111T>C | non_coding_transcript_exon_variant | 0.13 |
rrs | 1473034 | n.1189A>G | non_coding_transcript_exon_variant | 0.11 |
rrs | 1473035 | n.1190G>A | non_coding_transcript_exon_variant | 0.16 |
rrs | 1473051 | n.1206T>C | non_coding_transcript_exon_variant | 0.11 |
rrs | 1473056 | n.1211A>T | non_coding_transcript_exon_variant | 0.17 |
rrs | 1473066 | n.1221A>G | non_coding_transcript_exon_variant | 0.16 |
rrs | 1473166 | n.1321G>A | non_coding_transcript_exon_variant | 0.17 |
rrs | 1473177 | n.1332G>A | non_coding_transcript_exon_variant | 0.12 |
rrs | 1473192 | n.1347A>G | non_coding_transcript_exon_variant | 0.17 |
rrs | 1473205 | n.1360T>C | non_coding_transcript_exon_variant | 0.14 |
rrl | 1473436 | n.-222T>A | upstream_gene_variant | 0.17 |
rrl | 1473855 | n.198A>G | non_coding_transcript_exon_variant | 0.14 |
rrl | 1474001 | n.344C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474218 | n.561T>A | non_coding_transcript_exon_variant | 0.12 |
rrl | 1474228 | n.571T>C | non_coding_transcript_exon_variant | 0.12 |
rrl | 1474249 | n.592G>T | non_coding_transcript_exon_variant | 0.13 |
rrl | 1474252 | n.595T>A | non_coding_transcript_exon_variant | 0.14 |
rrl | 1474528 | n.871T>A | non_coding_transcript_exon_variant | 0.13 |
rrl | 1474537 | n.880G>A | non_coding_transcript_exon_variant | 0.19 |
rrl | 1474542 | n.885A>G | non_coding_transcript_exon_variant | 0.12 |
rrl | 1474551 | n.894G>C | non_coding_transcript_exon_variant | 0.11 |
rrl | 1474552 | n.895C>T | non_coding_transcript_exon_variant | 0.11 |
rrl | 1474558 | n.901G>C | non_coding_transcript_exon_variant | 0.12 |
rrl | 1474780 | n.1123C>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1474783 | n.1126G>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1474790 | n.1133C>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1474794 | n.1137C>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1475751 | n.2094C>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1475763 | n.2106C>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1475764 | n.2107A>C | non_coding_transcript_exon_variant | 0.12 |
rrl | 1475765 | n.2108A>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1475772 | n.2115A>C | non_coding_transcript_exon_variant | 0.12 |
rrl | 1475777 | n.2120A>T | non_coding_transcript_exon_variant | 0.11 |
rrl | 1475881 | n.2224T>C | non_coding_transcript_exon_variant | 0.11 |
rrl | 1475916 | n.2259C>G | non_coding_transcript_exon_variant | 0.12 |
rrl | 1475975 | n.2318C>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476250 | n.2593C>G | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476251 | n.2594T>C | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476257 | n.2600G>C | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476280 | n.2623A>C | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476455 | n.2798C>G | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476501 | n.2844C>T | non_coding_transcript_exon_variant | 0.15 |
fabG1 | 1673690 | p.Val84Glu | missense_variant | 0.11 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2168863 | c.1750C>T | synonymous_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
ahpC | 2726491 | p.His100Arg | missense_variant | 1.0 |
folC | 2747356 | p.Met81Ile | missense_variant | 0.14 |
folC | 2747362 | c.237G>T | synonymous_variant | 0.14 |
Rv2752c | 3066038 | p.His52Asn | missense_variant | 0.13 |
Rv3083 | 3448497 | c.-7T>A | upstream_gene_variant | 1.0 |
alr | 3840764 | c.657G>C | synonymous_variant | 1.0 |
rpoA | 3878622 | c.-115C>A | upstream_gene_variant | 0.4 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
aftB | 4267844 | c.993C>T | synonymous_variant | 0.15 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407556 | p.Ala216Gly | missense_variant | 0.1 |
Rv3083 | 3448497 | c.-6_*1408del | transcript_ablation | 1.0 |