Run ID: ERR2514551
Sample name:
Date: 31-03-2023 20:24:31
Number of reads: 1126867
Percentage reads mapped: 99.49
Strain: lineage4.8
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.8 | Euro-American (mainly T) | T1;T2;T3;T5 | RD219 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
mshA | 575877 | p.Ala177Val | missense_variant | 0.11 |
mshA | 576751 | p.Lys468Asn | missense_variant | 0.17 |
rpoB | 759615 | c.-192A>C | upstream_gene_variant | 0.2 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1302885 | c.-46G>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2168149 | p.Pro822Ser | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
folC | 2746328 | p.Arg424Leu | missense_variant | 0.11 |
Rv2752c | 3064875 | c.1317C>G | synonymous_variant | 1.0 |
ald | 3086987 | p.Gln56His | missense_variant | 1.0 |
Rv3083 | 3448497 | c.-7T>A | upstream_gene_variant | 1.0 |
fprA | 3474119 | p.Met38Thr | missense_variant | 1.0 |
Rv3236c | 3612445 | c.672C>T | synonymous_variant | 0.12 |
fbiA | 3641477 | p.Asp312Gly | missense_variant | 1.0 |
embC | 4240655 | p.Ala265Pro | missense_variant | 0.12 |
embC | 4241586 | p.Ser575Tyr | missense_variant | 0.11 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
aftB | 4267908 | p.Ala310Asp | missense_variant | 0.12 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
Rv3083 | 3448508 | c.6_*1408del | frameshift_variant&stop_lost&splice_region_variant | 1.0 |