Run ID: ERR2515269
Sample name:
Date: 31-03-2023 20:50:42
Number of reads: 543048
Percentage reads mapped: 99.74
Strain: lineage4.4.1.1
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.4 | Euro-American | S;T | None | 1.0 |
lineage4.4.1 | Euro-American (S-type) | S;T | None | 1.0 |
lineage4.4.1.1 | Euro-American | S;Orphans | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
tlyA | 1918492 | p.Phe185Leu | missense_variant | 0.1 | capreomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9138 | p.Gln613Glu | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
ccsA | 620128 | p.Gly80Arg | missense_variant | 0.14 |
ccsA | 620584 | p.Thr232Ala | missense_variant | 0.14 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 777416 | c.1065G>T | synonymous_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1305105 | c.2175G>C | synonymous_variant | 0.11 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2102990 | p.Val18Ala | missense_variant | 1.0 |
PPE35 | 2168479 | p.Thr712Pro | missense_variant | 1.0 |
PPE35 | 2169840 | p.Gly258Asp | missense_variant | 1.0 |
PPE35 | 2170479 | p.Phe45Ser | missense_variant | 0.12 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2288760 | p.Ala161Val | missense_variant | 0.11 |
folC | 2746390 | c.1209G>T | synonymous_variant | 0.14 |
folC | 2746548 | p.Asp351Tyr | missense_variant | 0.11 |
pepQ | 2860355 | p.Met22Val | missense_variant | 0.12 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
Rv3083 | 3448608 | c.105G>A | synonymous_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
whiB7 | 3568624 | p.Pro19Leu | missense_variant | 0.11 |
whiB7 | 3568779 | c.-100T>C | upstream_gene_variant | 1.0 |
whiB7 | 3568848 | c.-169G>T | upstream_gene_variant | 0.12 |
Rv3236c | 3612392 | p.Val242Glu | missense_variant | 0.11 |
Rv3236c | 3612665 | p.Val151Ala | missense_variant | 1.0 |
embC | 4240723 | c.861C>A | synonymous_variant | 0.18 |
embC | 4241072 | p.Leu404Met | missense_variant | 0.13 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4245453 | p.Ala741Thr | missense_variant | 0.11 |
aftB | 4268870 | c.-34G>A | upstream_gene_variant | 0.15 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |