Run ID: ERR2515782
Sample name:
Date: 31-03-2023 21:06:58
Number of reads: 545555
Percentage reads mapped: 99.78
Strain: lineage4.3.2
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.3 | Euro-American (LAM) | mainly-LAM | None | 1.0 |
lineage4.3.2 | Euro-American (LAM) | LAM3 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7123 | c.-179C>A | upstream_gene_variant | 0.11 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 8052 | p.Ile251Phe | missense_variant | 0.11 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
ccsA | 620529 | c.639G>A | synonymous_variant | 0.11 |
rpoC | 764995 | c.1626C>G | synonymous_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776775 | p.Asn569Ile | missense_variant | 0.11 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1303626 | c.696C>T | synonymous_variant | 0.12 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1471783 | n.-63C>T | upstream_gene_variant | 0.17 |
rrs | 1472337 | n.492C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472825 | n.980G>A | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476223 | n.2566A>G | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476307 | n.2650A>G | non_coding_transcript_exon_variant | 0.11 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
tlyA | 1918546 | p.Leu203Met | missense_variant | 0.13 |
PPE35 | 2170048 | p.Leu189Val | missense_variant | 0.11 |
PPE35 | 2170053 | p.Thr187Ser | missense_variant | 0.1 |
PPE35 | 2170066 | p.Ala183Thr | missense_variant | 0.1 |
PPE35 | 2170768 | c.-156C>T | upstream_gene_variant | 0.15 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289943 | c.-702T>C | upstream_gene_variant | 0.12 |
thyA | 3073868 | p.Thr202Ala | missense_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3474220 | p.Glu72* | stop_gained | 0.13 |
Rv3236c | 3612530 | p.Phe196Ser | missense_variant | 0.15 |
Rv3236c | 3612883 | c.234T>C | synonymous_variant | 0.17 |
clpC1 | 4038287 | c.2418C>T | synonymous_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4245601 | p.Pro790Leu | missense_variant | 0.11 |
embA | 4245763 | p.Gly844Val | missense_variant | 0.18 |
ubiA | 4270024 | c.-191T>C | upstream_gene_variant | 0.13 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4408156 | p.Leu16Arg | missense_variant | 1.0 |