Run ID: ERR2515981
Sample name:
Date: 31-03-2023 21:13:35
Number of reads: 346094
Percentage reads mapped: 99.63
Strain: lineage4.1.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.1 | Euro-American | T;X;H | None | 1.0 |
lineage4.1.1 | Euro-American (X-type) | X1;X2;X3 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491504 | p.Leu241Pro | missense_variant | 0.12 |
ccsA | 620525 | c.637delG | frameshift_variant | 0.1 |
rpoB | 762285 | p.Arg827Ser | missense_variant | 0.11 |
rpoB | 763081 | p.Gly1092Asp | missense_variant | 0.18 |
rpoC | 763962 | p.Arg198His | missense_variant | 0.13 |
rpoC | 765150 | p.Gly594Glu | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1303651 | p.Arg241Trp | missense_variant | 0.1 |
embR | 1416226 | c.1122T>C | synonymous_variant | 0.11 |
embR | 1416787 | c.561C>T | synonymous_variant | 0.12 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1473224 | n.1379G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1473464 | n.-194A>T | upstream_gene_variant | 0.12 |
rrl | 1473529 | n.-129T>C | upstream_gene_variant | 0.12 |
rrl | 1475058 | n.1401C>T | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476716 | n.3059A>G | non_coding_transcript_exon_variant | 0.11 |
tlyA | 1917806 | c.-134T>G | upstream_gene_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
tlyA | 1918364 | p.Glu142Gly | missense_variant | 0.12 |
tlyA | 1918462 | p.Ala175Ser | missense_variant | 0.11 |
ndh | 2103124 | c.-82T>A | upstream_gene_variant | 0.29 |
katG | 2155559 | p.Phe185Leu | missense_variant | 0.12 |
PPE35 | 2168162 | c.2451C>A | synonymous_variant | 0.17 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2519106 | p.Cys331Phe | missense_variant | 0.12 |
folC | 2747750 | c.-152G>A | upstream_gene_variant | 0.25 |
ribD | 2987024 | p.Met62Ile | missense_variant | 0.11 |
Rv2752c | 3065773 | p.Glu140Gly | missense_variant | 0.12 |
Rv2752c | 3065998 | p.Arg65Pro | missense_variant | 0.11 |
thyX | 3067543 | p.Ala135Ser | missense_variant | 0.23 |
ald | 3086643 | c.-177T>C | upstream_gene_variant | 0.1 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
Rv3083 | 3448589 | p.Asp29Val | missense_variant | 0.11 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fbiA | 3640502 | c.-41C>T | upstream_gene_variant | 0.29 |
ddn | 3986990 | c.154_156dupACC | conservative_inframe_insertion | 0.15 |
clpC1 | 4040892 | c.-188A>G | upstream_gene_variant | 0.13 |
panD | 4044437 | c.-156C>T | upstream_gene_variant | 0.12 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242803 | p.Val981Leu | missense_variant | 1.0 |
embB | 4249160 | p.Ile883Val | missense_variant | 0.22 |
embB | 4249408 | c.2895G>A | synonymous_variant | 1.0 |
ubiA | 4269773 | p.Ile21Val | missense_variant | 0.14 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407625 | p.Ala193Val | missense_variant | 0.13 |