Run ID: ERR2660480
Sample name:
Date: 31-03-2023 22:51:24
Number of reads: 769682
Percentage reads mapped: 99.76
Strain: lineage4.7
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.7 | Euro-American (mainly T) | T1;T5 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
fgd1 | 491267 | p.Ile162Thr | missense_variant | 0.13 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1474294 | n.637C>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475355 | n.1698C>T | non_coding_transcript_exon_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2102494 | c.549T>C | synonymous_variant | 1.0 |
PPE35 | 2168066 | p.Phe849Leu | missense_variant | 0.11 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
folC | 2746299 | p.Glu434Lys | missense_variant | 1.0 |
folC | 2746592 | p.Pro336Arg | missense_variant | 0.12 |
thyX | 3067398 | p.Ile183Asn | missense_variant | 0.17 |
thyX | 3067419 | p.Pro176Leu | missense_variant | 0.13 |
Rv3236c | 3612269 | p.Asp283Val | missense_variant | 0.12 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embB | 4249732 | c.3219C>G | synonymous_variant | 1.0 |
aftB | 4268087 | p.Trp250* | stop_gained | 0.11 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |