TB-Profiler result

Run: ERR3148187

Summary

Run ID: ERR3148187

Sample name:

Date: 19-10-2023 21:41:31

Number of reads: NA

Percentage reads mapped: NA

Strain: lineage4.8

Drug-resistance: MDR-TB


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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.8 Euro-American (mainly T) T1;T2;T3;T5 RD219 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rpoB 761155 p.Ser450Leu missense_variant 1.0 rifampicin
rpsL 781687 p.Lys43Arg missense_variant 1.0 streptomycin
fabG1 1673425 c.-15C>T upstream_gene_variant 1.0 isoniazid, ethionamide
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 5596 c.357T>G synonymous_variant 1.0
gyrA 7362 p.Glu21Gln missense_variant 1.0
rpoB 762745 p.Gln980Arg missense_variant 1.0
mmpL5 775639 p.Ile948Val missense_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrl 1474001 n.344C>T non_coding_transcript_exon_variant 1.0
tlyA 1917972 c.33A>G synonymous_variant 1.0
katG 2155627 p.Ala162Val missense_variant 0.99
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
thyA 3074231 p.Asp81Asn missense_variant 1.0
alr 3840764 c.657G>C synonymous_variant 1.0
embC 4242497 p.Arg879Gly missense_variant 1.0
embA 4242643 c.-590C>T upstream_gene_variant 1.0
Rv3083 3448506 c.4_*1407del stop_lost&conservative_inframe_deletion&splice_region_variant 1.0