TB-Profiler result

Run: ERR3283041
Summary

Run ID: ERR3283041

Sample name:

Date: 01-04-2023 01:18:48

Number of reads: 16845

Percentage reads mapped: 1.57

Strain: lineage4.9

Drug-resistance: Other

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rrs 1472733 n.888G>A non_coding_transcript_exon_variant 0.46 streptomycin
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 6673 c.-629A>C upstream_gene_variant 1.0
gyrA 6676 c.-626T>G upstream_gene_variant 1.0
gyrA 6680 c.-622C>T upstream_gene_variant 1.0
gyrA 6700 c.-602T>C upstream_gene_variant 1.0
gyrA 6703 c.-599G>T upstream_gene_variant 1.0
gyrA 6709 c.-593A>G upstream_gene_variant 1.0
gyrA 6712 c.-590G>C upstream_gene_variant 1.0
gyrA 6730 c.-572A>G upstream_gene_variant 1.0
gyrA 6739 c.-563C>T upstream_gene_variant 1.0
gyrA 6745 c.-557T>C upstream_gene_variant 1.0
gyrA 7472 c.171T>C synonymous_variant 1.0
gyrA 7475 c.174A>C synonymous_variant 1.0
gyrA 7480 p.Phe60Tyr missense_variant 1.0
gyrA 7484 c.183T>C synonymous_variant 1.0
gyrA 7487 c.186C>G synonymous_variant 1.0
gyrA 7499 c.198G>C synonymous_variant 1.0
gyrA 7514 c.213C>G synonymous_variant 1.0
gyrA 7517 c.216G>A synonymous_variant 1.0
gyrA 7520 c.219G>C synonymous_variant 1.0
gyrA 7523 c.222C>A synonymous_variant 1.0
gyrA 7526 c.225G>C synonymous_variant 1.0
gyrA 7529 c.228G>C synonymous_variant 1.0
gyrA 7541 c.240C>G synonymous_variant 1.0
gyrA 9236 c.1935G>C synonymous_variant 1.0
gyrA 9242 c.1941A>C synonymous_variant 1.0
gyrA 9263 c.1962C>T synonymous_variant 1.0
gyrA 9267 p.Asn656Gly missense_variant 1.0
gyrA 9275 c.1974G>A synonymous_variant 1.0
gyrA 9287 c.1986G>C synonymous_variant 1.0
gyrA 9296 c.1995T>C synonymous_variant 1.0
gyrA 9304 p.Gly668Glu missense_variant 1.0
gyrA 9323 c.2022C>G synonymous_variant 1.0
gyrA 9335 c.2034G>C synonymous_variant 1.0
rpoB 761165 c.1359G>C synonymous_variant 1.0
rpoB 761168 c.1362C>G synonymous_variant 1.0
rpoB 761174 c.1368T>G synonymous_variant 1.0
rpoB 761180 c.1374A>C synonymous_variant 1.0
rpoB 761189 c.1383T>C synonymous_variant 1.0
rpoB 761195 c.1389G>C synonymous_variant 1.0
rpoB 761198 c.1392G>C synonymous_variant 1.0
rpoB 761204 c.1398C>G synonymous_variant 1.0
rpoB 761219 c.1413G>C synonymous_variant 1.0
rpoB 761220 c.1414_1416delTCGinsAGC synonymous_variant 1.0
rpoB 761249 c.1443A>G synonymous_variant 1.0
rpoB 761255 c.1449T>G synonymous_variant 1.0
rpoB 761258 c.1452G>A synonymous_variant 1.0
rpoB 761261 c.1455G>C synonymous_variant 1.0
rpoB 761273 c.1467T>C synonymous_variant 1.0
rpoB 761282 c.1476C>G synonymous_variant 1.0
rpoB 761666 c.1860G>C synonymous_variant 1.0
rpoB 761669 c.1863C>T synonymous_variant 1.0
rpoB 761675 c.1869G>C synonymous_variant 1.0
rpoB 761682 c.1876C>T synonymous_variant 1.0
rpoB 761687 c.1881C>T synonymous_variant 1.0
rpoB 761690 c.1884G>C synonymous_variant 1.0
rpoB 761747 c.1941G>C synonymous_variant 1.0
rpoB 761750 c.1944G>C synonymous_variant 1.0
rpoB 761765 c.1959T>C synonymous_variant 1.0
rpoB 762086 c.2280G>C synonymous_variant 1.0
rpoB 762101 c.2295C>G synonymous_variant 1.0
rpoB 762114 p.Ile770Val missense_variant 1.0
rpoB 762140 c.2334G>C synonymous_variant 1.0
rpoB 762143 c.2337T>C synonymous_variant 1.0
rpoB 762149 c.2343G>C synonymous_variant 1.0
rpoB 762158 c.2352G>C synonymous_variant 1.0
rpoB 762176 c.2370T>C synonymous_variant 1.0
rpoB 762185 c.2379G>C synonymous_variant 1.0
rpoB 762218 c.2412T>C synonymous_variant 0.67
rpoB 762233 c.2427G>C synonymous_variant 1.0
rpoB 762308 c.2502G>C synonymous_variant 1.0
rpoB 762314 c.2508C>T synonymous_variant 1.0
rpoB 762317 c.2511A>G synonymous_variant 1.0
rpoC 762416 c.-954A>G upstream_gene_variant 1.0
rpoC 762449 c.-921C>A upstream_gene_variant 1.0
rpoC 762452 c.-918G>C upstream_gene_variant 1.0
rpoC 762470 c.-900G>C upstream_gene_variant 1.0
rpoC 762488 c.-882G>C upstream_gene_variant 1.0
rpoC 762491 c.-879T>C upstream_gene_variant 1.0
rpoC 762509 c.-861T>G upstream_gene_variant 1.0
rpoB 762510 p.Ala902Pro missense_variant 1.0
rpoC 762521 c.-849C>T upstream_gene_variant 1.0
rpoC 762527 c.-843G>C upstream_gene_variant 1.0
rpoC 762533 c.-837T>C upstream_gene_variant 1.0
rpoC 762536 c.-834T>C upstream_gene_variant 1.0
rpoC 762537 c.-833T>C upstream_gene_variant 1.0
rpoC 762551 c.-819C>T upstream_gene_variant 1.0
rpoC 762995 c.-375G>C upstream_gene_variant 1.0
rpoC 763004 c.-366G>A upstream_gene_variant 1.0
rpoC 763007 c.-363C>T upstream_gene_variant 1.0
rpoC 763028 c.-342T>C upstream_gene_variant 1.0
rpoC 763031 c.-339T>G upstream_gene_variant 1.0
rpoC 763034 c.-336C>G upstream_gene_variant 1.0
rpoC 763040 c.-330C>G upstream_gene_variant 1.0
rpoC 763050 c.-320C>T upstream_gene_variant 1.0
rpoC 763070 c.-300T>C upstream_gene_variant 1.0
rpoC 763082 c.-288C>G upstream_gene_variant 1.0
rpoC 763085 c.-285C>G upstream_gene_variant 1.0
rpoC 763546 c.177A>G synonymous_variant 1.0
rpoC 763570 c.201G>C synonymous_variant 1.0
rpoC 763573 c.204G>C synonymous_variant 0.5
rpoC 763594 c.225C>T synonymous_variant 0.5
rpoC 763622 p.Ala85Ser missense_variant 0.4
rpoC 763633 c.264T>C synonymous_variant 0.5
rpoC 763636 c.267T>C synonymous_variant 0.5
rpoC 763642 c.273G>C synonymous_variant 0.33
rpoC 763660 c.291T>C synonymous_variant 1.0
rpoC 763666 c.297G>A synonymous_variant 0.67
rpoC 763672 c.303C>G synonymous_variant 0.5
rpoC 763675 c.306C>A synonymous_variant 0.5
rpoC 763714 c.345G>C synonymous_variant 1.0
rpoC 763732 c.363C>G synonymous_variant 1.0
rpoC 763744 c.375G>C synonymous_variant 1.0
rpoC 764611 c.1242G>C synonymous_variant 1.0
rpoC 764632 c.1263T>C synonymous_variant 1.0
rpoC 764650 c.1281G>T synonymous_variant 1.0
rpoC 764662 c.1293G>C synonymous_variant 1.0
rpoC 764706 p.Leu446Gln missense_variant 1.0
rpoC 764716 c.1347G>C synonymous_variant 1.0
mmpL5 775981 p.Leu834Met missense_variant 1.0
mmpL5 775985 c.2496C>T synonymous_variant 1.0
mmpL5 775991 c.2490G>A synonymous_variant 1.0
mmpL5 775997 c.2484T>C synonymous_variant 1.0
mmpL5 776003 p.Ile826Leu missense_variant 1.0
mmpL5 776009 c.2472A>G synonymous_variant 1.0
mmpL5 776015 p.Ile822Leu missense_variant 1.0
mmpL5 776027 c.2454G>C synonymous_variant 1.0
mmpL5 776047 c.2434C>T synonymous_variant 1.0
mmpL5 776056 p.Val809Leu missense_variant 1.0
mmpL5 776060 c.2421C>G synonymous_variant 1.0
rpsL 781880 c.321C>G synonymous_variant 1.0
rpsL 781892 c.333A>G synonymous_variant 1.0
rpsL 781904 c.345C>T synonymous_variant 1.0
rpsL 781916 c.357T>C synonymous_variant 1.0
rpsL 781929 p.Gly124Ser missense_variant 1.0
rplC 800612 c.-197A>G upstream_gene_variant 1.0
rplC 800618 c.-191T>C upstream_gene_variant 1.0
rplC 800627 c.-182C>T upstream_gene_variant 1.0
rplC 800633 c.-176T>C upstream_gene_variant 1.0
rplC 800759 c.-50C>T upstream_gene_variant 1.0
rplC 800762 c.-47T>G upstream_gene_variant 1.0
rplC 800771 c.-38C>T upstream_gene_variant 1.0
rplC 800774 c.-35C>T upstream_gene_variant 1.0
rrs 1472085 n.240C>T non_coding_transcript_exon_variant 0.67
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 0.67
rrs 1472107 n.262A>G non_coding_transcript_exon_variant 0.67
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 1.0
rrs 1472112 n.267C>T non_coding_transcript_exon_variant 0.67
rrs 1472122 n.277G>T non_coding_transcript_exon_variant 0.5
rrs 1472123 n.278A>T non_coding_transcript_exon_variant 0.5
rrs 1472124 n.279C>T non_coding_transcript_exon_variant 0.5
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.88
rrs 1472151 n.306C>A non_coding_transcript_exon_variant 0.25
rrs 1472160 n.315C>T non_coding_transcript_exon_variant 0.78
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 0.33
rrs 1472225 n.380C>G non_coding_transcript_exon_variant 1.0
rrs 1472240 n.395G>A non_coding_transcript_exon_variant 0.67
rrs 1472251 n.406G>C non_coding_transcript_exon_variant 0.75
rrs 1472337 n.492C>G non_coding_transcript_exon_variant 0.67
rrs 1472380 n.535G>C non_coding_transcript_exon_variant 0.43
rrs 1472438 n.593T>C non_coding_transcript_exon_variant 0.4
rrs 1472446 n.601T>A non_coding_transcript_exon_variant 1.0
rrs 1472452 n.607G>A non_coding_transcript_exon_variant 1.0
rrs 1472453 n.608G>A non_coding_transcript_exon_variant 0.4
rrs 1472456 n.611T>C non_coding_transcript_exon_variant 0.4
rrs 1472459 n.614C>T non_coding_transcript_exon_variant 0.4
rrs 1472464 n.619A>G non_coding_transcript_exon_variant 0.4
rrs 1472489 n.644A>G non_coding_transcript_exon_variant 0.67
rrs 1472507 n.662C>G non_coding_transcript_exon_variant 0.5
rrs 1472517 n.672T>A non_coding_transcript_exon_variant 0.29
rrs 1472518 n.673G>T non_coding_transcript_exon_variant 0.4
rrs 1472530 n.685G>A non_coding_transcript_exon_variant 0.71
rrs 1472537 n.692C>T non_coding_transcript_exon_variant 0.71
rrs 1472544 n.699C>T non_coding_transcript_exon_variant 0.5
rrs 1472545 n.700A>T non_coding_transcript_exon_variant 0.25
rrs 1472557 n.712G>A non_coding_transcript_exon_variant 0.6
rrs 1472571 n.726G>C non_coding_transcript_exon_variant 0.7
rrs 1472579 n.734G>T non_coding_transcript_exon_variant 0.5
rrs 1472581 n.736A>T non_coding_transcript_exon_variant 0.62
rrs 1472598 n.753A>C non_coding_transcript_exon_variant 0.67
rrs 1472599 n.754G>T non_coding_transcript_exon_variant 0.57
rrs 1472616 n.771G>A non_coding_transcript_exon_variant 0.64
rrs 1472655 n.810G>A non_coding_transcript_exon_variant 0.61
rrs 1472658 n.813G>A non_coding_transcript_exon_variant 0.53
rrs 1472661 n.816A>G non_coding_transcript_exon_variant 0.4
rrs 1472665 n.820G>A non_coding_transcript_exon_variant 0.4
rrs 1472670 n.824_825insTGGA non_coding_transcript_exon_variant 0.6
rrs 1472678 n.833T>G non_coding_transcript_exon_variant 0.46
rrs 1472679 n.834T>C non_coding_transcript_exon_variant 0.46
rrs 1472682 n.839_843delGGGAT non_coding_transcript_exon_variant 0.6
rrs 1472690 n.845C>A non_coding_transcript_exon_variant 0.43
rrs 1472695 n.850C>T non_coding_transcript_exon_variant 0.4
rrs 1472697 n.852T>C non_coding_transcript_exon_variant 0.64
rrs 1472713 n.868T>C non_coding_transcript_exon_variant 0.47
rrs 1472716 n.871C>T non_coding_transcript_exon_variant 0.47
rrs 1472742 n.897C>T non_coding_transcript_exon_variant 0.42
rrs 1472744 n.899A>G non_coding_transcript_exon_variant 0.5
rrs 1472828 n.983T>C non_coding_transcript_exon_variant 0.4
rrs 1472951 n.1106T>C non_coding_transcript_exon_variant 0.33
rrs 1472953 n.1108G>A non_coding_transcript_exon_variant 0.25
rrs 1472955 n.1110C>T non_coding_transcript_exon_variant 0.25
rrs 1472956 n.1111T>C non_coding_transcript_exon_variant 0.33
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 0.5
rrs 1472958 n.1113A>C non_coding_transcript_exon_variant 0.5
rrs 1472959 n.1114T>A non_coding_transcript_exon_variant 0.5
rrs 1472962 n.1117T>A non_coding_transcript_exon_variant 0.22
rrs 1472969 n.1124A>G non_coding_transcript_exon_variant 0.25
rrs 1472973 n.1128A>T non_coding_transcript_exon_variant 0.67
rrs 1472975 n.1130T>A non_coding_transcript_exon_variant 0.38
rrs 1472987 n.1142G>T non_coding_transcript_exon_variant 0.5
rrs 1472988 n.1143T>G non_coding_transcript_exon_variant 0.43
rrs 1472990 n.1145A>G non_coding_transcript_exon_variant 0.29
rrs 1473000 n.1155G>A non_coding_transcript_exon_variant 0.29
rrs 1473003 n.1158G>A non_coding_transcript_exon_variant 0.25
rrs 1473005 n.1160C>T non_coding_transcript_exon_variant 0.38
rrs 1473010 n.1165C>T non_coding_transcript_exon_variant 0.33
rrs 1473035 n.1190G>A non_coding_transcript_exon_variant 0.62
rrs 1473044 n.1199C>G non_coding_transcript_exon_variant 0.25
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 0.8
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 1.0
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 1.0
rrs 1473205 n.1360T>C non_coding_transcript_exon_variant 0.4
rrs 1473259 n.1414C>T non_coding_transcript_exon_variant 0.4
rrs 1473276 n.1431A>G non_coding_transcript_exon_variant 0.8
rrs 1473290 n.1445C>T non_coding_transcript_exon_variant 1.0
rrs 1473301 n.1456T>C non_coding_transcript_exon_variant 0.4
rrs 1473315 n.1470T>C non_coding_transcript_exon_variant 0.4
rrs 1473316 n.1471C>T non_coding_transcript_exon_variant 0.4
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 1.0
rrl 1474812 n.1155G>A non_coding_transcript_exon_variant 0.6
rrl 1474823 n.1166C>G non_coding_transcript_exon_variant 0.4
rrl 1474827 n.1170C>T non_coding_transcript_exon_variant 0.4
rrl 1474830 n.1173A>T non_coding_transcript_exon_variant 1.0
rrl 1474831 n.1174A>G non_coding_transcript_exon_variant 0.5
rrl 1475355 n.1698C>T non_coding_transcript_exon_variant 1.0
rrl 1475366 n.1709G>A non_coding_transcript_exon_variant 1.0
rrl 1475369 n.1712G>T non_coding_transcript_exon_variant 1.0
rrl 1475379 n.1722G>A non_coding_transcript_exon_variant 1.0
rrl 1475380 n.1723C>A non_coding_transcript_exon_variant 1.0
rrl 1475381 n.1724G>C non_coding_transcript_exon_variant 1.0
rrl 1475382 n.1725A>C non_coding_transcript_exon_variant 1.0
rrl 1475395 n.1738T>G non_coding_transcript_exon_variant 1.0
rrl 1475396 n.1739C>G non_coding_transcript_exon_variant 1.0
rrl 1475397 n.1740G>T non_coding_transcript_exon_variant 1.0
rrl 1475398 n.1741C>T non_coding_transcript_exon_variant 1.0
rrl 1475403 n.1746T>A non_coding_transcript_exon_variant 1.0
rrl 1475404 n.1747A>T non_coding_transcript_exon_variant 1.0
rrl 1475419 n.1762C>T non_coding_transcript_exon_variant 1.0
rrl 1475429 n.1772G>A non_coding_transcript_exon_variant 1.0
rrl 1475430 n.1773T>G non_coding_transcript_exon_variant 1.0
rrl 1475452 n.1795C>A non_coding_transcript_exon_variant 1.0
rrl 1475458 n.1801C>T non_coding_transcript_exon_variant 1.0
rrl 1475460 n.1803A>G non_coding_transcript_exon_variant 1.0
rrl 1475479 n.1822C>T non_coding_transcript_exon_variant 1.0
rrl 1475480 n.1823A>C non_coding_transcript_exon_variant 1.0
rrl 1475483 n.1826C>T non_coding_transcript_exon_variant 1.0
rrl 1475545 n.1888T>G non_coding_transcript_exon_variant 1.0
rrl 1475602 n.1945G>C non_coding_transcript_exon_variant 1.0
rrl 1475603 n.1946G>C non_coding_transcript_exon_variant 1.0
rrl 1475605 n.1948A>T non_coding_transcript_exon_variant 1.0
rrl 1475608 n.1951T>C non_coding_transcript_exon_variant 1.0
rrl 1475612 n.1955G>C non_coding_transcript_exon_variant 1.0
rrl 1475621 n.1964T>C non_coding_transcript_exon_variant 1.0
rrl 1475629 n.1972_1973insC non_coding_transcript_exon_variant 1.0
rrl 1475637 n.1980T>A non_coding_transcript_exon_variant 1.0
rrl 1475638 n.1981C>G non_coding_transcript_exon_variant 1.0
rrl 1475639 n.1982C>G non_coding_transcript_exon_variant 1.0
rrl 1475643 n.1986C>G non_coding_transcript_exon_variant 0.67
rrl 1475647 n.1990G>C non_coding_transcript_exon_variant 0.67
rrl 1475659 n.2002G>A non_coding_transcript_exon_variant 1.0
rrl 1475713 n.2056C>G non_coding_transcript_exon_variant 0.6
rrl 1475715 n.2058G>A non_coding_transcript_exon_variant 0.43
rrl 1475716 n.2059A>G non_coding_transcript_exon_variant 0.43
rrl 1475722 n.2065G>T non_coding_transcript_exon_variant 0.25
rrl 1475747 n.2090A>G non_coding_transcript_exon_variant 0.5
rrl 1475751 n.2094C>T non_coding_transcript_exon_variant 0.33
rrl 1475753 n.2096C>T non_coding_transcript_exon_variant 0.44
rrl 1475764 n.2107A>T non_coding_transcript_exon_variant 0.33
rrl 1475775 n.2118G>A non_coding_transcript_exon_variant 0.33
rrl 1475777 n.2120A>T non_coding_transcript_exon_variant 0.4
rrl 1475781 n.2124T>C non_coding_transcript_exon_variant 0.5
rrl 1475803 n.2146T>C non_coding_transcript_exon_variant 0.36
rrl 1475804 n.2147G>C non_coding_transcript_exon_variant 0.36
rrl 1475816 n.2159C>G non_coding_transcript_exon_variant 0.36
rrl 1475817 n.2160A>G non_coding_transcript_exon_variant 0.36
rrl 1475883 n.2226A>G non_coding_transcript_exon_variant 0.38
rrl 1475884 n.2227A>G non_coding_transcript_exon_variant 0.56
rrl 1475900 n.2243A>G non_coding_transcript_exon_variant 0.25
rrl 1475906 n.2249C>T non_coding_transcript_exon_variant 0.38
rrl 1475916 n.2259C>T non_coding_transcript_exon_variant 0.88
rrl 1475937 n.2280A>T non_coding_transcript_exon_variant 0.29
rrl 1475943 n.2286G>A non_coding_transcript_exon_variant 0.25
rrl 1475952 n.2295A>G non_coding_transcript_exon_variant 0.29
rrl 1475970 n.2313C>T non_coding_transcript_exon_variant 0.43
rrl 1475977 n.2320A>G non_coding_transcript_exon_variant 0.33
rrl 1475978 n.2321C>T non_coding_transcript_exon_variant 0.33
rrl 1475982 n.2325G>A non_coding_transcript_exon_variant 0.4
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 1.0
rrl 1475991 n.2334T>C non_coding_transcript_exon_variant 0.5
rrl 1475995 n.2338G>A non_coding_transcript_exon_variant 0.67
rrl 1476030 n.2373A>G non_coding_transcript_exon_variant 1.0
rrl 1476032 n.2375C>A non_coding_transcript_exon_variant 0.67
rrl 1476034 n.2377C>G non_coding_transcript_exon_variant 1.0
rrl 1476035 n.2378G>C non_coding_transcript_exon_variant 0.67
rrl 1476044 n.2387T>G non_coding_transcript_exon_variant 1.0
rrl 1476047 n.2390G>T non_coding_transcript_exon_variant 1.0
rrl 1476049 n.2392C>T non_coding_transcript_exon_variant 1.0
rrl 1476115 n.2458T>C non_coding_transcript_exon_variant 1.0
rrl 1476165 n.2508T>A non_coding_transcript_exon_variant 1.0
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 1.0
rrl 1476215 n.2558C>T non_coding_transcript_exon_variant 0.75
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.67
rrl 1476229 n.2572C>G non_coding_transcript_exon_variant 0.33
rrl 1476245 n.2588C>T non_coding_transcript_exon_variant 0.25
rrl 1476251 n.2594T>C non_coding_transcript_exon_variant 0.75
rrl 1476252 n.2595T>A non_coding_transcript_exon_variant 1.0
rrl 1476256 n.2599A>T non_coding_transcript_exon_variant 0.38
rrl 1476260 n.2603A>G non_coding_transcript_exon_variant 0.67
rrl 1476280 n.2623A>C non_coding_transcript_exon_variant 0.5
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.38
rrl 1476293 n.2636C>T non_coding_transcript_exon_variant 0.5
rrl 1476294 n.2637A>G non_coding_transcript_exon_variant 0.83
rrl 1476295 n.2638C>G non_coding_transcript_exon_variant 0.83
rrl 1476296 n.2639C>T non_coding_transcript_exon_variant 0.83
rrl 1476297 n.2640C>T non_coding_transcript_exon_variant 0.75
rrl 1476301 n.2644A>C non_coding_transcript_exon_variant 0.5
rrl 1476302 n.2645G>A non_coding_transcript_exon_variant 0.71
rrl 1476311 n.2654G>C non_coding_transcript_exon_variant 0.86
rrl 1476312 n.2655T>C non_coding_transcript_exon_variant 0.86
rrl 1476313 n.2656G>A non_coding_transcript_exon_variant 0.57
rrl 1476332 n.2675G>C non_coding_transcript_exon_variant 0.86
rrl 1476338 n.2681C>T non_coding_transcript_exon_variant 0.71
rrl 1476353 n.2696G>T non_coding_transcript_exon_variant 0.5
rrl 1476358 n.2701T>C non_coding_transcript_exon_variant 0.88
rrl 1476359 n.2702C>T non_coding_transcript_exon_variant 0.29
rrl 1476369 n.2712C>T non_coding_transcript_exon_variant 0.63
rrl 1476372 n.2715T>C non_coding_transcript_exon_variant 0.64
rrl 1476381 n.2724G>A non_coding_transcript_exon_variant 0.38
rrl 1476382 n.2725A>G non_coding_transcript_exon_variant 0.89
rrl 1476383 n.2726T>A non_coding_transcript_exon_variant 0.59
rrl 1476408 n.2751G>A non_coding_transcript_exon_variant 0.52
rrl 1476411 n.2754G>A non_coding_transcript_exon_variant 0.38
rrl 1476425 n.2768G>T non_coding_transcript_exon_variant 0.67
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.91
rrl 1476429 n.2772A>C non_coding_transcript_exon_variant 0.41
rrl 1476463 n.2806C>T non_coding_transcript_exon_variant 0.4
rrl 1476466 n.2809C>T non_coding_transcript_exon_variant 0.54
rrl 1476481 n.2824T>C non_coding_transcript_exon_variant 0.83
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 0.7
rrl 1476512 n.2855C>T non_coding_transcript_exon_variant 0.43
rrl 1476529 n.2872A>G non_coding_transcript_exon_variant 1.0
rpsA 1833685 c.144G>T synonymous_variant 1.0
rpsA 1833694 c.153G>C synonymous_variant 1.0
rpsA 1833697 c.156C>G synonymous_variant 1.0
rpsA 1833709 c.168C>T synonymous_variant 1.0
rpsA 1833727 c.186G>C synonymous_variant 1.0
rpsA 1833733 c.192C>G synonymous_variant 1.0
rpsA 1833734 p.Ala65Ser missense_variant 1.0
rpsA 1833739 c.198C>A synonymous_variant 1.0
rpsA 1833745 c.204G>C synonymous_variant 1.0
rpsA 1833787 c.246C>G synonymous_variant 1.0
rpsA 1833790 c.249T>C synonymous_variant 1.0
rpsA 1833793 c.252C>T synonymous_variant 1.0
rpsA 1834348 c.807T>C synonymous_variant 1.0
rpsA 1834411 c.870T>C synonymous_variant 1.0
rpsA 1834423 c.882G>C synonymous_variant 1.0
rpsA 1834451 c.910T>C synonymous_variant 1.0
rpsA 1834456 c.915T>G synonymous_variant 1.0
rpsA 1834465 c.924T>C synonymous_variant 1.0
rpsA 1834468 c.927A>G synonymous_variant 1.0
rpsA 1834489 c.948T>C synonymous_variant 1.0
rpsA 1834513 c.972C>G synonymous_variant 1.0
rpsA 1834520 p.Ala327Ser missense_variant 1.0
rpsA 1834528 c.987T>C synonymous_variant 1.0
rpsA 1834540 c.999G>T synonymous_variant 1.0
rpsA 1834546 c.1005T>C synonymous_variant 1.0
rpoA 3878217 c.291A>G synonymous_variant 1.0
rpoA 3878244 c.264G>A synonymous_variant 1.0
rpoA 3878247 c.261G>C synonymous_variant 1.0
rpoA 3878250 c.258C>G synonymous_variant 1.0
rpoA 3878256 c.252G>C synonymous_variant 1.0
rpoA 3878262 p.Ser82Gly missense_variant 1.0
rpoA 3878271 c.237T>C synonymous_variant 1.0
rpoA 3878274 c.234G>C synonymous_variant 1.0
rpoA 3878283 p.Glu75Asp missense_variant 1.0
rpoA 3878292 c.216T>C synonymous_variant 1.0
rpoA 3878298 c.210A>G synonymous_variant 1.0
rpoA 3878301 c.207C>G synonymous_variant 1.0
rpoA 3878310 c.198G>C synonymous_variant 1.0
rpoA 3878322 c.186A>G synonymous_variant 1.0
rpoA 3878331 c.177A>G synonymous_variant 1.0
rpoA 3878337 c.171T>C synonymous_variant 1.0
ddn 3986661 c.-183C>A upstream_gene_variant 1.0
ddn 3986667 c.-177_-175delCTCinsACG upstream_gene_variant 1.0
ddn 3986681 c.-163C>G upstream_gene_variant 1.0
ddn 3986690 c.-154C>T upstream_gene_variant 1.0
clpC1 4038519 p.Arg729Gln missense_variant 1.0
clpC1 4038533 p.Arg724Gln missense_variant 1.0
clpC1 4038596 c.2109A>G synonymous_variant 1.0
clpC1 4038605 c.2100G>A synonymous_variant 1.0
clpC1 4038613 p.Asn698His missense_variant 1.0
clpC1 4038614 c.2091C>T synonymous_variant 1.0
clpC1 4038623 c.2082A>G synonymous_variant 1.0
clpC1 4039031 c.1674T>G synonymous_variant 1.0
clpC1 4039037 c.1668T>G synonymous_variant 1.0
clpC1 4039064 c.1641C>T synonymous_variant 1.0
clpC1 4039067 c.1638G>C synonymous_variant 1.0
clpC1 4039073 c.1632C>G synonymous_variant 1.0
clpC1 4039082 c.1623C>T synonymous_variant 1.0
clpC1 4039085 c.1620A>G synonymous_variant 1.0
clpC1 4039097 c.1608G>C synonymous_variant 1.0
clpC1 4039103 c.1602T>C synonymous_variant 1.0
clpC1 4039112 c.1593C>G synonymous_variant 1.0
clpC1 4039121 c.1584T>C synonymous_variant 0.75
clpC1 4039142 c.1563A>G synonymous_variant 0.75
clpC1 4039145 c.1560G>C synonymous_variant 0.75
clpC1 4039163 p.Leu514Ile missense_variant 0.67
clpC1 4039347 p.Arg453Gln missense_variant 0.75
clpC1 4039352 c.1353C>T synonymous_variant 0.75
clpC1 4039358 p.Ser449Arg missense_variant 0.75
clpC1 4039382 c.1323C>G synonymous_variant 0.75
clpC1 4039391 c.1314T>G synonymous_variant 0.75
clpC1 4039397 c.1308A>G synonymous_variant 0.67
clpC1 4039406 c.1299G>C synonymous_variant 1.0
clpC1 4039409 c.1296T>C synonymous_variant 1.0
clpC1 4039412 c.1293T>G synonymous_variant 1.0
clpC1 4039415 p.Glu430Asp missense_variant 1.0
clpC1 4039589 c.1116G>C synonymous_variant 1.0
clpC1 4039601 c.1104G>C synonymous_variant 1.0
clpC1 4039661 c.1044T>C synonymous_variant 1.0
clpC1 4039664 c.1041G>C synonymous_variant 1.0
clpC1 4039724 c.981A>G synonymous_variant 1.0
clpC1 4039748 c.957G>C synonymous_variant 1.0
clpC1 4039751 c.954A>G synonymous_variant 1.0
clpC1 4039757 c.948A>G synonymous_variant 1.0
clpC1 4039760 c.945T>C synonymous_variant 1.0
clpC1 4039766 c.939T>G synonymous_variant 1.0
clpC1 4039769 c.936C>G synonymous_variant 1.0
clpC1 4039778 c.927A>G synonymous_variant 1.0
clpC1 4039781 c.924G>C synonymous_variant 1.0
clpC1 4039787 c.916_918delTCGinsAGC synonymous_variant 1.0
clpC1 4039952 c.753T>C synonymous_variant 1.0
clpC1 4039960 p.Thr249Ser missense_variant 0.67
clpC1 4039977 p.Lys243Arg missense_variant 0.5
clpC1 4039988 c.717C>G synonymous_variant 0.5
clpC1 4040003 c.702G>C synonymous_variant 0.67
clpC1 4040009 c.696C>G synonymous_variant 0.67
clpC1 4040015 c.690G>C synonymous_variant 0.67
clpC1 4040021 c.684A>C synonymous_variant 1.0
clpC1 4040024 c.681A>G synonymous_variant 1.0
clpC1 4040033 c.672G>C synonymous_variant 1.0
clpC1 4040063 c.642G>C synonymous_variant 0.75
clpC1 4040087 c.618G>C synonymous_variant 0.67
clpC1 4040090 c.615T>C synonymous_variant 1.0
clpC1 4040411 c.294T>C synonymous_variant 1.0
clpC1 4040423 c.282A>G synonymous_variant 1.0
clpC1 4040426 c.279T>C synonymous_variant 1.0
clpC1 4040431 c.274T>C synonymous_variant 1.0
clpC1 4040495 c.210C>T synonymous_variant 1.0
clpC1 4040522 c.183T>C synonymous_variant 1.0
clpC1 4040531 c.174T>C synonymous_variant 1.0
clpC1 4040537 c.168G>C synonymous_variant 1.0
clpC1 4040546 c.159G>C synonymous_variant 1.0
clpC1 4040551 c.154T>C synonymous_variant 1.0