TB-Profiler result

Run: ERR3439281
Summary

Run ID: ERR3439281

Sample name:

Date: 01-04-2023 02:01:13

Number of reads: 23329

Percentage reads mapped: 2.25

Strain: lineage4.9

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 9304 p.Gly668Asp missense_variant 1.0
gyrA 9375 p.Pro692Ser missense_variant 1.0
fgd1 490863 c.81C>T synonymous_variant 1.0
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 1.0
rrs 1472112 n.267C>T non_coding_transcript_exon_variant 0.5
rrs 1472127 n.282C>T non_coding_transcript_exon_variant 1.0
rrs 1472128 n.283G>C non_coding_transcript_exon_variant 1.0
rrs 1472129 n.284G>A non_coding_transcript_exon_variant 1.0
rrs 1472137 n.292G>A non_coding_transcript_exon_variant 0.75
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 1.0
rrs 1472151 n.306C>T non_coding_transcript_exon_variant 0.5
rrs 1472160 n.315C>T non_coding_transcript_exon_variant 0.5
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 1.0
rrs 1472181 n.336G>A non_coding_transcript_exon_variant 0.5
rrs 1472225 n.380C>A non_coding_transcript_exon_variant 1.0
rrs 1472517 n.672T>A non_coding_transcript_exon_variant 1.0
rrs 1472530 n.685G>A non_coding_transcript_exon_variant 1.0
rrs 1472537 n.692C>T non_coding_transcript_exon_variant 1.0
rrs 1472541 n.696T>G non_coding_transcript_exon_variant 0.67
rrs 1472545 n.700A>T non_coding_transcript_exon_variant 1.0
rrs 1472553 n.708C>T non_coding_transcript_exon_variant 0.67
rrs 1472571 n.726G>C non_coding_transcript_exon_variant 1.0
rrs 1472572 n.727T>C non_coding_transcript_exon_variant 0.67
rrs 1472574 n.729T>C non_coding_transcript_exon_variant 0.67
rrs 1472582 n.738_739delTA non_coding_transcript_exon_variant 0.67
rrs 1472594 n.749G>C non_coding_transcript_exon_variant 0.67
rrs 1472598 n.753A>T non_coding_transcript_exon_variant 1.0
rrs 1472616 n.771G>A non_coding_transcript_exon_variant 1.0
rrl 1476336 n.2679C>T non_coding_transcript_exon_variant 0.83
rrl 1476356 n.2699C>A non_coding_transcript_exon_variant 0.62
rrl 1476357 n.2700T>C non_coding_transcript_exon_variant 0.86
rrl 1476358 n.2701T>C non_coding_transcript_exon_variant 0.88
rrl 1476359 n.2702C>G non_coding_transcript_exon_variant 0.83
rrl 1476368 n.2711T>C non_coding_transcript_exon_variant 0.31
rrl 1476369 n.2712C>T non_coding_transcript_exon_variant 0.92
rrl 1476372 n.2715T>C non_coding_transcript_exon_variant 0.27
rrl 1476381 n.2724G>A non_coding_transcript_exon_variant 0.62
rrl 1476381 n.2724G>C non_coding_transcript_exon_variant 0.7
rrl 1476382 n.2725A>G non_coding_transcript_exon_variant 0.93
rrl 1476383 n.2726T>G non_coding_transcript_exon_variant 0.69
rrl 1476384 n.2727G>T non_coding_transcript_exon_variant 0.53
rrl 1476408 n.2751G>A non_coding_transcript_exon_variant 0.8
rrl 1476411 n.2754G>A non_coding_transcript_exon_variant 0.69
rrl 1476425 n.2768G>A non_coding_transcript_exon_variant 0.69
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.92
rrl 1476429 n.2772A>C non_coding_transcript_exon_variant 0.19
rrl 1476442 n.2785T>A non_coding_transcript_exon_variant 0.44
rrl 1476443 n.2786G>T non_coding_transcript_exon_variant 0.5
rrl 1476455 n.2798C>A non_coding_transcript_exon_variant 0.53
rrl 1476456 n.2799A>T non_coding_transcript_exon_variant 0.47
rrl 1476463 n.2806C>T non_coding_transcript_exon_variant 0.73
rrl 1476466 n.2809C>T non_coding_transcript_exon_variant 0.73
rrl 1476481 n.2824T>C non_coding_transcript_exon_variant 0.58
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 0.88
rrl 1476512 n.2855C>T non_coding_transcript_exon_variant 0.4
rrl 1476514 n.2857C>G non_coding_transcript_exon_variant 0.67
rrl 1476519 n.2862C>G non_coding_transcript_exon_variant 1.0
rpsA 1834859 p.Ala440Thr missense_variant 1.0
tlyA 1917972 c.33A>G synonymous_variant 1.0
kasA 2519063 p.Ile317Phe missense_variant 1.0
folC 2746318 c.1281C>A synonymous_variant 1.0
embC 4240671 p.Thr270Ile missense_variant 1.0
embC 4240958 p.Arg366Trp missense_variant 0.4