Run ID: ERR3439281
Sample name:
Date: 01-04-2023 02:01:13
Number of reads: 23329
Percentage reads mapped: 2.25
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
gyrA | 9375 | p.Pro692Ser | missense_variant | 1.0 |
fgd1 | 490863 | c.81C>T | synonymous_variant | 1.0 |
rrs | 1472106 | n.261G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472112 | n.267C>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472127 | n.282C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472128 | n.283G>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472129 | n.284G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472137 | n.292G>A | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472151 | n.306C>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472160 | n.315C>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472181 | n.336G>A | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472225 | n.380C>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472517 | n.672T>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472530 | n.685G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472537 | n.692C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472541 | n.696T>G | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472545 | n.700A>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472553 | n.708C>T | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472572 | n.727T>C | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472574 | n.729T>C | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472582 | n.738_739delTA | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472594 | n.749G>C | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472598 | n.753A>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476336 | n.2679C>T | non_coding_transcript_exon_variant | 0.83 |
rrl | 1476356 | n.2699C>A | non_coding_transcript_exon_variant | 0.62 |
rrl | 1476357 | n.2700T>C | non_coding_transcript_exon_variant | 0.86 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.88 |
rrl | 1476359 | n.2702C>G | non_coding_transcript_exon_variant | 0.83 |
rrl | 1476368 | n.2711T>C | non_coding_transcript_exon_variant | 0.31 |
rrl | 1476369 | n.2712C>T | non_coding_transcript_exon_variant | 0.92 |
rrl | 1476372 | n.2715T>C | non_coding_transcript_exon_variant | 0.27 |
rrl | 1476381 | n.2724G>A | non_coding_transcript_exon_variant | 0.62 |
rrl | 1476381 | n.2724G>C | non_coding_transcript_exon_variant | 0.7 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.93 |
rrl | 1476383 | n.2726T>G | non_coding_transcript_exon_variant | 0.69 |
rrl | 1476384 | n.2727G>T | non_coding_transcript_exon_variant | 0.53 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.8 |
rrl | 1476411 | n.2754G>A | non_coding_transcript_exon_variant | 0.69 |
rrl | 1476425 | n.2768G>A | non_coding_transcript_exon_variant | 0.69 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.92 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476442 | n.2785T>A | non_coding_transcript_exon_variant | 0.44 |
rrl | 1476443 | n.2786G>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476455 | n.2798C>A | non_coding_transcript_exon_variant | 0.53 |
rrl | 1476456 | n.2799A>T | non_coding_transcript_exon_variant | 0.47 |
rrl | 1476463 | n.2806C>T | non_coding_transcript_exon_variant | 0.73 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.73 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.58 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.88 |
rrl | 1476512 | n.2855C>T | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476514 | n.2857C>G | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476519 | n.2862C>G | non_coding_transcript_exon_variant | 1.0 |
rpsA | 1834859 | p.Ala440Thr | missense_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
kasA | 2519063 | p.Ile317Phe | missense_variant | 1.0 |
folC | 2746318 | c.1281C>A | synonymous_variant | 1.0 |
embC | 4240671 | p.Thr270Ile | missense_variant | 1.0 |
embC | 4240958 | p.Arg366Trp | missense_variant | 0.4 |