TB-Profiler result

Run: ERR4028199
Summary

Run ID: ERR4028199

Sample name:

Date: 01-04-2023 04:20:36

Number of reads: 1480587

Percentage reads mapped: 99.94

Strain: lineage4.9

Drug-resistance: Other

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
folC 2747141 p.Glu153Ala missense_variant 1.0 para-aminosalicylic_acid
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
fgd1 491166 c.384G>T synonymous_variant 0.1
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrl 1473776 n.119A>G non_coding_transcript_exon_variant 0.1
PPE35 2169281 c.1332T>G synonymous_variant 0.1
fbiB 3642122 p.Asp196Glu missense_variant 0.12
alr 3841546 c.-126C>A upstream_gene_variant 0.16
embA 4244781 p.Arg517Ser missense_variant 0.11