Run ID: ERR4132442
Sample name:
Date: 01-04-2023 04:30:19
Number of reads: 725873
Percentage reads mapped: 99.83
Strain: lineage4.8
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.8 | Euro-American (mainly T) | T1;T2;T3;T5 | RD219 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7530 | p.Val77Phe | missense_variant | 0.11 |
ccsA | 619739 | c.-152A>T | upstream_gene_variant | 0.13 |
ccsA | 619946 | p.Thr19Asn | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 778864 | c.-384C>T | upstream_gene_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1474001 | n.344C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476103 | n.2446C>T | non_coding_transcript_exon_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2168149 | p.Pro822Ser | missense_variant | 1.0 |
PPE35 | 2170048 | p.Leu189Val | missense_variant | 0.27 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289894 | c.-653G>A | upstream_gene_variant | 1.0 |
kasA | 2519191 | c.1077G>A | synonymous_variant | 0.15 |
folC | 2746851 | p.Val250Met | missense_variant | 0.12 |
Rv3236c | 3612979 | c.137delG | frameshift_variant | 0.1 |
clpC1 | 4040220 | p.Ser162Phe | missense_variant | 0.14 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4244769 | p.Gly513Arg | missense_variant | 0.12 |
embB | 4247574 | p.Asp354Gly | missense_variant | 0.1 |
aftB | 4267930 | p.Arg303Trp | missense_variant | 0.22 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4408099 | p.Leu35Arg | missense_variant | 1.0 |
Rv3083 | 3448507 | c.5_*1408del | frameshift_variant&stop_lost&splice_region_variant | 1.0 |