Run ID: ERR4195243
Sample name:
Date: 01-04-2023 05:09:12
Number of reads: 2333803
Percentage reads mapped: 99.67
Strain: lineage4
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
mshA | 575776 | c.429C>T | synonymous_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
Rv1258c | 1406094 | p.Gly416Glu | missense_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472101 | n.256G>T | non_coding_transcript_exon_variant | 0.18 |
rrs | 1473095 | n.1250G>T | non_coding_transcript_exon_variant | 0.11 |
rrl | 1475756 | n.2099T>C | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476287 | n.2630A>G | non_coding_transcript_exon_variant | 0.15 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 0.98 |
katG | 2154980 | c.1132C>T | synonymous_variant | 1.0 |
PPE35 | 2170811 | c.-199C>T | upstream_gene_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
aftB | 4268076 | p.Met254Ala | missense_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |