Run ID: ERR4407462
Sample name:
Date: 01-04-2023 05:45:05
Number of reads: 236812
Percentage reads mapped: 99.57
Strain: lineage4.1.2.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.1 | Euro-American | T;X;H | None | 1.0 |
lineage4.1.2 | Euro-American | T;H | None | 1.0 |
lineage4.1.2.1 | Euro-American (Haarlem) | T1;H1 | RD182 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 5705 | p.Leu156Met | missense_variant | 0.12 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491591 | p.Lys270Met | missense_variant | 1.0 |
mshA | 575505 | p.His53Arg | missense_variant | 0.22 |
mshA | 575679 | p.Asn111Ser | missense_variant | 1.0 |
ccsA | 620748 | c.858T>G | synonymous_variant | 0.67 |
rpoB | 759620 | c.-187A>C | upstream_gene_variant | 0.27 |
rpoB | 760115 | c.309C>T | synonymous_variant | 1.0 |
rpoB | 760879 | p.Pro358Leu | missense_variant | 0.22 |
rpoC | 764787 | p.Lys473Met | missense_variant | 0.11 |
rpoC | 765150 | p.Gly594Glu | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpS5 | 778626 | c.279_280insGTGAGCG | frameshift_variant | 0.11 |
mmpS5 | 778630 | p.Leu92Phe | missense_variant | 0.11 |
rpsL | 781368 | c.-192T>G | upstream_gene_variant | 0.29 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1474827 | n.1170C>A | non_coding_transcript_exon_variant | 0.12 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2156173 | c.-62C>G | upstream_gene_variant | 0.2 |
PPE35 | 2168165 | c.2448G>A | synonymous_variant | 0.12 |
PPE35 | 2168286 | p.Ile776Thr | missense_variant | 0.2 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289107 | c.132_134delCGT | disruptive_inframe_deletion | 0.14 |
kasA | 2518076 | c.-39C>T | upstream_gene_variant | 1.0 |
eis | 2714347 | p.Phe329Tyr | missense_variant | 0.11 |
eis | 2714639 | p.Asp232His | missense_variant | 0.2 |
ahpC | 2726338 | p.Val49Gly | missense_variant | 0.2 |
thyA | 3074645 | c.-174T>G | upstream_gene_variant | 0.43 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fbiB | 3641636 | c.102C>T | synonymous_variant | 0.12 |
fbiB | 3642323 | c.789T>A | synonymous_variant | 0.22 |
rpoA | 3877684 | p.Leu275Gln | missense_variant | 0.13 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242803 | p.Val981Leu | missense_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |