Run ID: ERR4423500
Sample name:
Date: 01-04-2023 05:51:25
Number of reads: 726710
Percentage reads mapped: 99.63
Strain: lineage4.9
Drug-resistance: MDR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rpoB | 761139 | p.His445Asp | missense_variant | 1.0 | rifampicin |
katG | 2155168 | p.Ser315Thr | missense_variant | 1.0 | isoniazid |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 5566 | p.Phe109Leu | missense_variant | 0.22 |
gyrB | 6136 | c.897G>A | synonymous_variant | 1.0 |
gyrB | 7052 | p.Asp605Tyr | missense_variant | 0.14 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
fgd1 | 491355 | c.573C>A | synonymous_variant | 0.2 |
rpoB | 759957 | p.Gln51Lys | missense_variant | 0.17 |
rpoB | 762107 | p.Ile767Met | missense_variant | 0.1 |
rpoB | 762907 | p.Lys1034Arg | missense_variant | 0.14 |
rplC | 800744 | c.-65G>A | upstream_gene_variant | 0.12 |
Rv1258c | 1407418 | c.-78T>C | upstream_gene_variant | 0.11 |
atpE | 1461072 | p.Leu10Val | missense_variant | 0.15 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rpsA | 1833584 | p.Asp15Tyr | missense_variant | 0.18 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2168913 | p.Pro567Leu | missense_variant | 0.18 |
PPE35 | 2170449 | p.Gly55Val | missense_variant | 0.14 |
pncA | 2290170 | c.-929T>C | upstream_gene_variant | 0.13 |
ahpC | 2726520 | p.Met110Val | missense_variant | 0.11 |
Rv2752c | 3065058 | c.1134C>T | synonymous_variant | 1.0 |
Rv2752c | 3065528 | c.664C>T | synonymous_variant | 1.0 |
thyA | 3073948 | p.Pro175Gln | missense_variant | 0.12 |
thyA | 3074049 | p.Met141Ile | missense_variant | 0.14 |
thyA | 3074095 | c.376delC | frameshift_variant | 0.17 |
Rv3083 | 3449352 | p.Met283Ile | missense_variant | 0.18 |
fprA | 3474282 | p.Glu92Asp | missense_variant | 0.14 |
fbiA | 3641157 | p.Asp205Glu | missense_variant | 0.12 |
rpoA | 3878424 | c.84G>A | synonymous_variant | 0.14 |
embB | 4249715 | p.Asp1068Tyr | missense_variant | 0.13 |
ethR | 4327144 | c.-405C>A | upstream_gene_variant | 0.2 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |