Run ID: ERR4553812
Sample name:
Date: 01-04-2023 06:21:31
Number of reads: 1741548
Percentage reads mapped: 99.8
Strain: lineage4.9
Drug-resistance: MDR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rpoB | 761155 | p.Ser450Trp | missense_variant | 1.0 | rifampicin |
katG | 2155168 | p.Ser315Thr | missense_variant | 1.0 | isoniazid |
pncA | 2289089 | p.His51Arg | missense_variant | 0.11 | pyrazinamide |
gid | 4407587 | p.Arg206* | stop_gained | 1.0 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
mshA | 576108 | p.Ala254Gly | missense_variant | 0.26 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2170065 | p.Ala183Gly | missense_variant | 0.16 |
ald | 3087818 | p.Cys333Trp | missense_variant | 0.16 |
fbiD | 3339734 | p.Ala206Gly | missense_variant | 0.38 |
whiB7 | 3568425 | c.255T>G | synonymous_variant | 0.24 |
embC | 4240409 | p.Pro183Ala | missense_variant | 0.15 |
embA | 4243699 | p.Pro156Leu | missense_variant | 0.98 |
embA | 4244697 | p.Val489Ile | missense_variant | 1.0 |
embB | 4247468 | p.Tyr319Asp | missense_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407711 | c.492C>G | synonymous_variant | 1.0 |