ERR9027247
|
MDR-TB
|
lineage4.8
|
None
|
SRR9971339
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR11082657
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13290881
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR11798639
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR23310819
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR24223036
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR23311003
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
ERR11082731
|
MDR-TB
|
lineage4.2.2.1
|
None
|
SRR6824382
|
RR-TB
|
lineage2.2.1
|
cn
|
SRR25515748
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR3611813
|
MDR-TB
|
lineage4.9
|
None
|
SRR1173155
|
MDR-TB
|
lineage4.3.2
|
None
|
ERR1352347
|
RR-TB
|
lineage2.2.2
|
cn
|
ERR2516774
|
MDR-TB
|
lineage4.1.2.1
|
gb
|
ERR2041700
|
MDR-TB
|
lineage4.2.2.1
|
None
|
ERR4553812
|
MDR-TB
|
lineage4.9
|
None
|
SRR19241808
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR19241809
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR3082094
|
Pre-XDR-TB
|
lineage1.1.2
|
None
|
ERR5864556
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR3509851
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR4809280
|
MDR-TB
|
lineage4.3.4.2.1
|
za
|
ERR4813923
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR29772389
|
RR-TB
|
lineage4.1.1.1
|
None
|
ERR13260149
|
MDR-TB
|
lineage4.3.2
|
None
|
ERR4818723
|
MDR-TB
|
lineage3.1.1
|
gb
|
ERR11082448
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5987437
|
MDR-TB
|
lineage4.3.2.1
|
None
|
SRR1048872
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR2516596
|
MDR-TB
|
lineage3
|
nl
|
ERR2653233
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR3287723
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR3287778
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR3132161
|
RR-TB
|
lineage4.8
|
None
|
SRR12416844
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR3610780
|
MDR-TB
|
lineage4.9
|
None
|
SRR3105731
|
Pre-XDR-TB
|
lineage3
|
None
|
SRR5341368
|
MDR-TB
|
lineage1.1.2
|
None
|
SRR1184310
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR21659830
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR924237
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR10680120
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR28239558
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR12328188
|
RR-TB
|
lineage2.2.1
|
None
|
DRR189117
|
RR-TB
|
lineage2.2.1
|
None
|
ERR4829697
|
Pre-XDR-TB
|
lineage4
|
None
|
ERR1034874
|
MDR-TB
|
lineage4.3.4.2
|
pt
|
ERR9993243
|
XDR-TB
|
lineage4.3.3
|
None
|
ERR2199914
|
Pre-XDR-TB
|
lineage4.2.2.1
|
rs
|
ERR4553410
|
MDR-TB
|
lineage4
|
None
|
ERR2653139
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR18693893
|
MDR-TB
|
lineage1.1.3.1
|
None
|
ERR2510353
|
RR-TB
|
lineage3
|
pk
|
ERR2510435
|
MDR-TB
|
lineage3
|
pk
|
ERR4276887
|
MDR-TB
|
lineage4.2.2.2
|
None
|
ERR1213886
|
MDR-TB
|
lineage2.2.1
|
np
|
ERR775366
|
MDR-TB
|
lineage4.1.2.1
|
pe
|
SRR6824652
|
MDR-TB
|
lineage2.2.1
|
cn
|
ERR2041731
|
MDR-TB
|
lineage4.2.2.1
|
rs
|
SRR18714920
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR11662703
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11043138
|
RR-TB
|
lineage4.8
|
None
|
SRR14801748
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR5817476
|
XDR-TB
|
lineage1.1.2
|
None
|
SRR25628575
|
Pre-XDR-TB
|
lineage4.5
|
None
|
ERR5866575
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR18593220
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6964534
|
MDR-TB
|
lineage3
|
None
|
ERR4798535
|
MDR-TB
|
lineage3.1.2.1
|
in
|
ERR046825
|
RR-TB
|
lineage4.1.1.1
|
gb
|
SRR17658011
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4812714
|
MDR-TB
|
lineage4.1.1.3
|
pe
|
ERR4829391
|
MDR-TB
|
lineage2.2.1
|
it
|
SRR19276618
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR4553902
|
MDR-TB
|
lineage4.8
|
None
|
ERR9120041
|
MDR-TB
|
lineage4.3.2.1
|
None
|
ERR7911114
|
Pre-XDR-TB
|
lineage2.2.1
|
vn
|
ERR8665502
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799994
|
Pre-XDR-TB
|
lineage3.1.2;lineage4.3.3
|
None
|
SRR1163146
|
MDR-TB
|
lineage3
|
None
|
ERR13292447
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR25827665
|
Pre-XDR-TB
|
lineage2.2.1;lineage3
|
None
|
SRR14801556
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR1180179
|
Pre-XDR-TB
|
lineage3
|
None
|
ERR2653238
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR11044021
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR13266420
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1049054
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR13290828
|
MDR-TB
|
lineage2.1
|
None
|
SRR27450418
|
RR-TB
|
lineage2.2.1.1
|
None
|
SRR13232535
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR18913795
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR1035312
|
Pre-XDR-TB
|
lineage4.3.3
|
br
|
SRR23311066
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
ERR11083101
|
MDR-TB
|
lineage3
|
None
|
SRR1013551
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR4829112
|
MDR-TB
|
lineage2.2.1
|
it
|
ERR2041748
|
Pre-XDR-TB
|
lineage4.2.2.1
|
rs
|
SAMN02403571
|
MDR-TB
|
lineage4.3.3
|
za
|
SRR6824661
|
MDR-TB
|
lineage3
|
cn
|
ERR4829773
|
MDR-TB
|
lineage4.1.1.3
|
None
|
SRR1159076
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7911149
|
MDR-TB
|
lineage1.1.1.1
|
vn
|
ERR8773811
|
RR-TB
|
lineage2.2.1
|
None
|
SRR1048851
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR046943
|
RR-TB
|
lineage4.1.1.1
|
gb
|
SRR16058383
|
MDR-TB
|
lineage1.2.1.2.1
|
None
|
SRR19241813
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR5485560
|
RR-TB
|
lineage4.9
|
None
|
SRR10040347
|
MDR-TB
|
lineage2.2.1.1
|
None
|
SRR30180348
|
Pre-XDR-TB
|
lineage4.5
|
None
|
SRR30180462
|
MDR-TB
|
lineage2.1
|
None
|
SRR28393518
|
MDR-TB
|
lineage4.8
|
None
|
ERR2041764
|
Pre-XDR-TB
|
lineage4.2.2.1
|
rs
|
ERR10762311
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.2.1
|
None
|
ERR3273184
|
MDR-TB
|
lineage4.9
|
None
|
SRR5535925
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR4830783
|
Pre-XDR-TB
|
lineage1.1.2
|
et
|
ERR11466114
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR6785270
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR2516605
|
MDR-TB
|
lineage4.1.1.3
|
pe
|
ERR2653223
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4798730
|
MDR-TB
|
lineage4.4.1.2
|
in
|
ERR551838
|
MDR-TB
|
lineage4.3.1
|
None
|
SRR10380078
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR10680051
|
RR-TB
|
lineage4.4.1.1
|
None
|
ERR1465842_ERR1465967
|
MDR-TB
|
lineage4.8
|
None
|
SRR25628576
|
MDR-TB
|
lineage4.5
|
None
|
SRR1167362
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR5865700
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4830808
|
Pre-XDR-TB
|
lineage1.1.2
|
et
|
ERR550793
|
RR-TB
|
lineage4.1.1.3
|
de
|
ERR5864555
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR12420707
|
MDR-TB
|
lineage4.5
|
None
|
SRR3082075
|
MDR-TB
|
lineage1.1.2
|
None
|
SRR24799196
|
MDR-TB
|
lineage3
|
None
|
ERR553163_ERR553162_ERR553161
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR14782048
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR17657983
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1182985
|
Pre-XDR-TB
|
lineage3
|
None
|
ERR11081181
|
MDR-TB
|
lineage3.1.1
|
None
|
SRR29385377
|
MDR-TB
|
lineage2.2.1;lineage2.2.2
|
None
|
SRR29231684
|
MDR-TB
|
lineage4.3.3;lineage4.6.1.2
|
None
|
ERR2515407
|
Pre-XDR-TB
|
lineage4.3.2.1
|
za
|
SRR28646099
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR23340064
|
MDR-TB
|
lineage4.8
|
None
|
ERR5864557
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR6866891
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR7911030
|
MDR-TB
|
lineage2.2.1
|
md
|
SRR7652996
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR4819384
|
MDR-TB
|
lineage3.1.1
|
None
|
ERR4553475
|
MDR-TB
|
lineage4.9
|
None
|
ERR11466470
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR9907719
|
MDR-TB
|
lineage4.3.4.1
|
None
|
SAMEA2535184
|
MDR-TB
|
lineage4.1.2.1
|
uz
|
SRR8375622
|
MDR-TB
|
lineage1.1.2
|
None
|
SRR1173851
|
MDR-TB
|
lineage4.3.2
|
None
|
SRR28351266
|
MDR-TB
|
lineage3
|
None
|
ERR4553687
|
RR-TB
|
|
None
|
SRR28351494
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR3086354
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR28044684
|
Pre-XDR-TB
|
lineage3
|
None
|
SRR5535923
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR28498449
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR28351373
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4553700
|
MDR-TB
|
|
None
|
ERR551200
|
MDR-TB
|
lineage4.3.1
|
None
|
ERR9907738
|
Pre-XDR-TB
|
lineage4.3.2
|
None
|
SRR28351253
|
Pre-XDR-TB
|
lineage3
|
None
|
SRR28351656
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR3335732
|
Pre-XDR-TB
|
lineage3.1.2
|
pk
|
SRR1165700
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR2516918
|
RR-TB
|
lineage3
|
gb
|
ERR3170483
|
RR-TB
|
lineage5.1.4
|
gh
|
SRR1048850
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR29772613
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
SRR2024960
|
MDR-TB
|
lineage2.2.1
|
cn
|
ERR10112895
|
MDR-TB
|
lineage4.3.2
|
None
|
ERR4797979
|
MDR-TB
|
lineage2.2.1
|
in
|
SRR3105781
|
MDR-TB
|
lineage3.1.2
|
None
|
ERR552341
|
RR-TB
|
lineage4.5
|
None
|
ERR10748266
|
Pre-XDR-TB
|
lineage4.3.2.1
|
None
|
SRR1723411
|
MDR-TB
|
lineage3
|
cn
|
ERR5864554
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9907701
|
MDR-TB
|
lineage4.9
|
None
|
SRR1011484
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR4423172
|
Pre-XDR-TB
|
lineage4.8
|
None
|
SRR23340104
|
MDR-TB
|
lineage4.8
|
None
|
ERR9806628
|
MDR-TB
|
lineage4.1.1.3
|
None
|
SRR27107252
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR1723851
|
MDR-TB
|
lineage2.2.1
|
cn
|
ERR11082090
|
MDR-TB
|
lineage3
|
None
|
ERR8665840
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11488642
|
Pre-XDR-TB
|
lineage4.8
|
None
|
ERR4799912
|
Pre-XDR-TB
|
lineage1.2.2.2;lineage3.1.2
|
in
|
ERR10762359
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
ERR2707212
|
MDR-TB
|
lineage4.3.3
|
cd
|
SRR1165332
|
MDR-TB
|
lineage4.3.2
|
None
|
SRR1169134
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4553876
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8975001
|
RR-TB
|
lineage2.2.1
|
None
|
SRR11033641
|
RR-TB
|
lineage4.3.3
|
None
|
SRR1169308
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR1465967
|
MDR-TB
|
lineage4.8
|
None
|
ERR4830791
|
Pre-XDR-TB
|
lineage1.1.2
|
et
|
ERR4553880
|
Pre-XDR-TB
|
lineage4.8
|
None
|
SRR28393617
|
MDR-TB
|
lineage4.8
|
None
|
ERR11798659
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR13276292
|
MDR-TB
|
lineage3.1.1
|
None
|
SRR2063842
|
RR-TB
|
lineage2.2.2
|
None
|
SRR29539371
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR5153863
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
ERR5866576
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR10112842
|
Pre-XDR-TB
|
lineage4.3.2
|
None
|
ERR4872339
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
SAMEA2534580
|
RR-TB
|
lineage4.5
|
uz
|
ERR4799597
|
MDR-TB
|
lineage3
|
in
|
SAMN02419579
|
MDR-TB
|
lineage2.2.1
|
by
|
SRR8186780
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5864552
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2041786
|
MDR-TB
|
lineage4.2.2.1
|
rs
|
SRR3085262
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR1175350
|
MDR-TB
|
lineage4.3.2
|
None
|
SRR14801618
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR1172080
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR553162
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR7902769
|
MDR-TB
|
lineage1.1.2
|
None
|
SRR5073521
|
MDR-TB
|
lineage2.2.1
|
vn
|
SRR13232542
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR21747011
|
RR-TB
|
lineage2.2.2
|
None
|
SRR13583419
|
MDR-TB
|
lineage4.7
|
None
|
SRR1146416
|
MDR-TB
|
lineage3
|
None
|
SRR3085310
|
Pre-XDR-TB
|
lineage1.1.2
|
None
|
SRR14801730
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR067627
|
MDR-TB
|
lineage2.2.1
|
ru
|
ERR11081305
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR25207304
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4553764
|
Pre-XDR-TB
|
lineage4.8
|
None
|
SRR28045942
|
MDR-TB
|
lineage3
|
None
|
SRR28351236
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
SRR29094439
|
MDR-TB
|
lineage4.7
|
None
|
SRR5817477
|
Pre-XDR-TB
|
lineage1.1.2
|
None
|
SRR6484982
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11082159
|
MDR-TB
|
lineage4.1.2.1;lineage4.8
|
None
|
ERR11082230
|
MDR-TB
|
lineage4.7
|
None
|
DRR130212
|
Pre-XDR-TB
|
lineage4.2.2
|
None
|
SAMN02584627
|
MDR-TB
|
lineage4.3.3
|
md
|
SRR29017376
|
MDR-TB
|
lineage4.8
|
None
|
SRR5153839
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR29017223
|
MDR-TB
|
lineage4.1.1.1
|
None
|
ERR553161
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR11083087
|
MDR-TB
|
lineage3
|
None
|
SRR2063843
|
RR-TB
|
lineage2.2.2
|
None
|
ERR2041736
|
Pre-XDR-TB
|
lineage4.2.2.1
|
rs
|
ERR4819235
|
MDR-TB
|
lineage3.1.1
|
None
|
ERR11081193
|
MDR-TB
|
lineage4.6.1.2
|
None
|
ERR2653201
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR552342
|
RR-TB
|
lineage4.5
|
None
|
ERR11488794
|
MDR-TB
|
lineage4.1.2
|
None
|
ERR4797663
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4553487
|
RR-TB
|
lineage3.1.2.1
|
None
|
ERR4819109
|
Pre-XDR-TB
|
lineage4
|
gb
|
SAMN02053806
|
MDR-TB
|
lineage4.3.3
|
za
|
ERR4553772
|
MDR-TB
|
lineage1.2.2.2
|
None
|
ERR10748371
|
MDR-TB
|
lineage4.1.1.3
|
None
|
ERR4553740
|
MDR-TB
|
lineage1.1.3.3
|
None
|
SAMN02403481
|
MDR-TB
|
lineage4.3.2
|
za
|
ERR13285181
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
ERR2199779
|
MDR-TB
|
lineage2.2.1
|
de
|
ERR8665611
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7645963
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR8975773
|
Pre-XDR-TB
|
lineage4.3.2
|
None
|
SRR5535921
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR2516410
|
MDR-TB
|
lineage4.2.1
|
nl
|
ERR2516505
|
MDR-TB
|
lineage4.4.1.1
|
nl
|
ERR4553757
|
MDR-TB
|
lineage1.1.3.1
|
None
|
SRR5486877
|
MDR-TB
|
lineage4
|
None
|
ERR4553627
|
MDR-TB
|
lineage4
|
None
|
ERR11081797
|
MDR-TB
|
lineage4.8
|
None
|
SRR833177
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR13232773
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14807687
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR17657987
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11069084
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR18593215
|
Pre-XDR-TB
|
lineage4.8
|
None
|
ERR7911433
|
RR-TB
|
lineage2.2.1
|
za
|
ERR11488550
|
Pre-XDR-TB
|
lineage4.8
|
None
|
SRR28409608
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR7910991
|
MDR-TB
|
lineage4.1.1
|
None
|
SRR29016972
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR17657984
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4423737
|
MDR-TB
|
lineage4.6.2.2
|
None
|
ERR2516993
|
MDR-TB
|
lineage4.1.2.1
|
gb
|
SRR5710015
|
Pre-XDR-TB
|
lineage2.2.2
|
th
|
ERR4816171
|
MDR-TB
|
lineage3.1.1
|
None
|
ERR7737729
|
MDR-TB
|
lineage4.2.2.2
|
None
|
SRR7068999
|
RR-TB
|
lineage3
|
None
|
ERR3287769
|
MDR-TB
|
lineage4.1.1
|
pe
|
ERR3132126
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR8923693
|
MDR-TB
|
lineage4.8
|
None
|
SRR6485031
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR29772791
|
Pre-XDR-TB
|
lineage3
|
None
|
ERR2041739
|
Pre-XDR-TB
|
lineage4.2.2.1
|
rs
|
ERR2653240
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR3287687
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR13284546
|
MDR-TB
|
lineage4.2.2.1
|
None
|
ERR4816645
|
MDR-TB
|
lineage3.1.1
|
None
|
SRR3085312
|
Pre-XDR-TB
|
lineage1.1.2
|
None
|
SRR28498385
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR1181353
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR5709780
|
Pre-XDR-TB
|
lineage2.2.2
|
th
|
SRR28394219
|
MDR-TB
|
lineage4.1.1.3;lineage4.1.2.1
|
None
|
SRR28351210
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR28394083
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR28498441
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
SRR28351643
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR28394175
|
MDR-TB
|
lineage4.8
|
None
|
SRR22461584
|
MDR-TB
|
lineage4.1.1.3
|
None
|
SRR28351232
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR27069390
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR11349207
|
RR-TB
|
lineage2.2.1
|
None
|
SRR28351404
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR27069369
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2510463
|
MDR-TB
|
lineage3
|
pk
|
SRR1013659
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR2510568
|
Pre-XDR-TB
|
lineage3
|
pk
|
ERR2516660
|
MDR-TB
|
lineage4.2.1
|
nl
|
SRR29356785
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR11069009
|
RR-TB
|
lineage4.8
|
None
|
SRR29772375
|
MDR-TB
|
lineage1.1.2
|
None
|
SRR29772686
|
MDR-TB
|
lineage4.8
|
None
|
ERR9119838
|
MDR-TB
|
lineage4.3.2.1
|
None
|
ERR4828953
|
Pre-XDR-TB
|
lineage4
|
None
|
SRR30180296
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4872215
|
MDR-TB
|
lineage4.6.2.2
|
None
|
ERR1352349
|
RR-TB
|
lineage2.2.2
|
cn
|
ERR1465842
|
MDR-TB
|
lineage4.8
|
None
|
ERR2041766
|
MDR-TB
|
lineage4.2.2.1
|
rs
|
ERR4831998
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMN02350441
|
MDR-TB
|
lineage4.3.3
|
za
|
SRR12420505
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR22424856
|
MDR-TB
|
lineage3.1.2
|
None
|
ERR11043090
|
MDR-TB
|
lineage4.2.2.1
|
None
|
ERR11043499
|
MDR-TB
|
lineage3
|
None
|
SRR17657986
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2510445
|
Pre-XDR-TB
|
lineage3
|
pk
|
ERR4553744
|
MDR-TB
|
lineage1.1.2
|
None
|
ERR4829761
|
Pre-XDR-TB
|
lineage4
|
None
|
ERR5864553
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9119609
|
MDR-TB
|
lineage4.6.2.2
|
None
|
ERR9124967
|
RR-TB
|
lineage1.1.2
|
None
|
SRR2024944
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
SRR21576641
|
MDR-TB
|
lineage4.5
|
None
|
SRR16370670
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11043438
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29050880
|
Pre-XDR-TB
|
lineage4.3.4.2
|
None
|
SRR1173860
|
MDR-TB
|
lineage4.3.2
|
None
|
ERR552341_ERR552342
|
RR-TB
|
lineage4.5
|
None
|
SRR28351418
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR21732935
|
RR-TB
|
lineage3
|
None
|
ERR13253896
|
MDR-TB
|
lineage4.2.2
|
None
|
ERR11488612
|
MDR-TB
|
lineage4.3.2
|
None
|
SRR1169223
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR5153844
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR13285767
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
ERR11466477
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR13291118
|
MDR-TB
|
lineage4.4.2
|
None
|
ERR1034713
|
MDR-TB
|
lineage4.1.2.1
|
pe
|
SAMN02414870
|
MDR-TB
|
lineage3
|
se
|
ERR072017
|
MDR-TB
|
lineage4.1.1.1
|
None
|
SRR1181122
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10680119
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR3323731
|
Pre-XDR-TB
|
lineage4.2.1;lineage4.4.1.1
|
None
|
SRR28498688
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR4812228
|
MDR-TB
|
lineage4.1.1.3
|
pe
|
ERR4827527
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR3610449
|
MDR-TB
|
lineage4.9
|
None
|
SRR14801644
|
MDR-TB
|
lineage4.8
|
None
|
SRR3105745
|
Pre-XDR-TB
|
lineage3;lineage4
|
None
|
ERR551131_ERR551130
|
MDR-TB
|
lineage4.8
|
None
|
SRR27069457
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13261571
|
MDR-TB
|
lineage4.3.4
|
None
|
ERR13285043
|
MDR-TB
|
lineage4.6.1.2
|
None
|
SRR12420450
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2041698
|
Pre-XDR-TB
|
lineage4.2.2.1
|
rs
|
SRR1167371
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR9125281
|
MDR-TB
|
lineage1.2.1.2.1
|
None
|
SAMEA4041329
|
MDR-TB
|
lineage4.8
|
None
|
SAMN02360555
|
Pre-XDR-TB
|
lineage2.2.2
|
kr
|
ERR3287756
|
RR-TB
|
lineage4.1.2.1
|
pe
|
ERR551130
|
MDR-TB
|
lineage4.8
|
None
|
ERR7737733
|
MDR-TB
|
lineage4.3.2.1
|
None
|
ERR5865533
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR3287829
|
MDR-TB
|
lineage4.8
|
pe
|
SAMN02584616
|
Pre-XDR-TB
|
lineage4.2.1
|
md
|
SRR11972326
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR718464
|
MDR-TB
|
lineage4.4.2
|
th
|
ERR11798660
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR14782037
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1013552
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR847798
|
MDR-TB
|
lineage4.1.2.1
|
za
|
SRR21747042
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR26399619
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1169048
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR14801768
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR7645828
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR13290906
|
MDR-TB
|
lineage2.1
|
None
|
SRR25207152
|
MDR-TB
|
lineage4.5
|
None
|
SRR5217434
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6832400
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR833048
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR23340121
|
MDR-TB
|
lineage4.8
|
None
|
SRR14782375
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR751396
|
MDR-TB
|
lineage4.3.3;lineage4.3.4.2
|
pe
|
SAMN02586011
|
MDR-TB
|
lineage4.3.3
|
za
|
ERR2041754
|
MDR-TB
|
lineage4.2.2.1
|
rs
|
SRR10828627
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR5818697
|
MDR-TB
|
lineage1.1.2
|
dj
|
SRR6789616
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR11081858
|
MDR-TB
|
lineage4.8
|
None
|
SRR1165618
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR10500312
|
Pre-XDR-TB
|
lineage1.1.2
|
None
|
ERR4831499
|
Pre-XDR-TB
|
lineage3
|
None
|
ERR1679656
|
MDR-TB
|
lineage4.6.2.2
|
ng
|
ERR2516695
|
MDR-TB
|
lineage4.9.1
|
nl
|
ERR2516656
|
MDR-TB
|
lineage4.2.1
|
None
|
DRR130144
|
MDR-TB
|
lineage4.2.2
|
None
|
ERR5917700
|
MDR-TB
|
lineage2.2.1
|
by
|
ERR13285172
|
MDR-TB
|
lineage4.7
|
None
|
SRR2063840
|
RR-TB
|
lineage2.2.2
|
None
|
ERR10762410
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR2024989
|
MDR-TB
|
lineage2.2.1
|
cn
|
SRR28351541
|
MDR-TB
|
lineage3
|
None
|
ERR4800294
|
Pre-XDR-TB
|
lineage4.3.3
|
in
|
SRR28046127
|
MDR-TB
|
lineage3.1.2
|
None
|
ERR4831270
|
MDR-TB
|
lineage4.3.4.2
|
de
|
ERR4813916
|
MDR-TB
|
lineage4.1.1.1
|
br
|
ERR7911434
|
RR-TB
|
lineage2.2.1
|
za
|
SRR1167261
|
MDR-TB
|
lineage4.3.2
|
None
|
ERR2677392
|
MDR-TB
|
lineage3
|
de
|
SRR24710079
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864551
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10040159
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1167321
|
MDR-TB
|
lineage4.3.2
|
None
|
SRR1172065
|
Pre-XDR-TB
|
lineage3
|
None
|
ERR11050282
|
MDR-TB
|
lineage4.5
|
None
|
SRR22137407
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28046304
|
MDR-TB
|
La1.2.BCG
|
None
|
ERR4553765
|
MDR-TB
|
lineage4.8
|
None
|
ERR551131
|
MDR-TB
|
lineage4.8
|
None
|
SRR6824557
|
MDR-TB
|
lineage2.2.1
|
cn
|
ERR2653227
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SAMN01925685
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR29539021
|
RR-TB
|
lineage4.3.3
|
None
|
ERR158595
|
MDR-TB
|
lineage4.3.3
|
ru
|
SRR1144789
|
MDR-TB
|
lineage3
|
None
|
ERR11488944
|
RR-TB
|
lineage4.8
|
None
|
ERR4829970
|
MDR-TB
|
lineage3
|
pk
|
ERR3794360
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11082129
|
MDR-TB
|
lineage4.8
|
None
|
SRR25206956
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1165278
|
MDR-TB
|
lineage4.3.2
|
None
|
SRR21887679
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2124103
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR1555053
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR2600413
|
RR-TB
|
lineage4.3.3
|
None
|
SRR5485583
|
RR-TB
|
lineage4.9
|
None
|
SRR22424935
|
Pre-XDR-TB
|
lineage3
|
None
|
SRR29289268
|
Pre-XDR-TB
|
lineage3
|
None
|
SRR14801506
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR4553519
|
MDR-TB
|
lineage4.8
|
None
|
SAMN02360608
|
Pre-XDR-TB
|
lineage2.2.2
|
kr
|
ERR13285052
|
MDR-TB
|
lineage4.8
|
None
|
ERR4800163
|
Pre-XDR-TB
|
lineage3
|
None
|
ERR4553602
|
MDR-TB
|
lineage4.8
|
None
|
ERR046986
|
MDR-TB
|
lineage4.1.1.1
|
gb
|
ERR11488640
|
MDR-TB
|
lineage4.8
|
None
|
SRR29080994
|
MDR-TB
|
lineage1.2.1.2.1
|
None
|
ERR4553866
|
Pre-XDR-TB
|
lineage4.8
|
None
|
SRR28351524
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR1723757
|
MDR-TB
|
lineage2.2.1
|
cn
|
ERR11773838
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR2510291
|
Pre-XDR-TB
|
lineage4.5
|
pk
|
SRR29051561
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR2514867
|
MDR-TB
|
lineage3
|
gb
|
ERR5897119
|
Pre-XDR-TB
|
lineage3
|
None
|
ERR1035026
|
RR-TB
|
lineage4.3.2
|
za
|
SRR9224966
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR13290957
|
MDR-TB
|
lineage2.1
|
None
|
ERR13266985
|
MDR-TB
|
lineage4.4.2
|
None
|
ERR7910939
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
ERR13260525
|
MDR-TB
|
lineage4.8
|
None
|
SRR29772749
|
MDR-TB
|
lineage1.1.2
|
None
|
SRR29772601
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR2179681
|
MDR-TB
|
lineage3
|
cn
|
ERR2510423
|
Pre-XDR-TB
|
lineage3
|
pk
|
SRR5485544
|
RR-TB
|
lineage4.9
|
None
|
ERR13285036
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR5865941
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5987222
|
MDR-TB
|
lineage4.3.2.1
|
None
|
SRR10380102
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR11082913
|
MDR-TB
|
lineage4.8
|
None
|
SRR28498393
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR038736
|
MDR-TB
|
lineage4.3.4.2
|
ug
|
ERR3287476
|
MDR-TB
|
lineage2.2.1
|
pe
|
ERR9907696
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR1013572
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR7829580
|
MDR-TB
|
lineage4.6.2.2
|
None
|
SRR14807626
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR14801418
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR28044893
|
MDR-TB
|
lineage4.8
|
None
|
ERR13284492
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29017040
|
MDR-TB
|
lineage1.1.3.1
|
None
|
SRR29017605
|
MDR-TB
|
lineage1.2.2.2
|
None
|
ERR1034683
|
MDR-TB
|
lineage4.1.2.1
|
co
|
SRR29681336
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR29772830
|
MDR-TB
|
lineage1.1.2
|
None
|
SRR23310933
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR7910930
|
MDR-TB
|
lineage4.2.1
|
md
|
ERR2510455
|
MDR-TB
|
lineage3
|
pk
|
ERR2510732
|
MDR-TB
|
lineage4.6.2.2
|
it
|
ERR2864266
|
MDR-TB
|
lineage4.1.2.1
|
pt
|
ERR3639771
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMN02585962
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
ERR2041686
|
MDR-TB
|
lineage4.2.2.1
|
None
|
ERR9120042
|
MDR-TB
|
lineage4.3.2.1
|
None
|
SRR1049055
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR1181310
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10610248
|
Pre-XDR-TB
|
lineage4.3.2.1
|
None
|
ERR13284474
|
RR-TB
|
lineage2.2.1
|
None
|
SRR13583376
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR10680123
|
MDR-TB
|
lineage6.3.3
|
None
|
ERR10762423
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR9992841
|
XDR-TB
|
lineage4.3.3
|
None
|
SRR16370414
|
MDR-TB
|
lineage1.1.1.1
|
None
|
ERR8773684
|
MDR-TB
|
lineage2.1
|
None
|
ERR117734
|
MDR-TB
|
lineage3
|
None
|
ERR4815588
|
RR-TB
|
lineage3
|
None
|
ERR1035261
|
MDR-TB
|
lineage4.3.2
|
br
|
ERR3273200
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4822115
|
MDR-TB
|
lineage3.1.1
|
None
|
SRR1173201
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4813820
|
Pre-XDR-TB
|
lineage4.3.2
|
None
|
ERR11080837
|
Pre-XDR-TB
|
lineage4.8
|
None
|
ERR11466004
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR7755641
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR2063844
|
RR-TB
|
lineage2.2.2
|
None
|
SAMEA2534652
|
MDR-TB
|
lineage4.8
|
uz
|
ERR9907746
|
MDR-TB
|
lineage4.3.2
|
None
|
ERR13260235
|
MDR-TB
|
lineage4.8
|
None
|
ERR13285900
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR29341462
|
MDR-TB
|
lineage4.1.2
|
None
|
SRR23310899
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR5818576
|
MDR-TB
|
lineage1.1.2
|
dj
|
ERR11082095
|
Pre-XDR-TB
|
lineage4.8
|
None
|
ERR2041759
|
MDR-TB
|
lineage4.2.2.1
|
rs
|
ERR4553493
|
MDR-TB
|
lineage1.1.3.1
|
None
|
SRR5818575
|
MDR-TB
|
lineage1.1.2
|
dj
|
SRR27107293
|
Pre-XDR-TB
|
lineage4.4.1.1
|
None
|
ERR2041755
|
MDR-TB
|
lineage4.8
|
rs
|
ERR2041762
|
MDR-TB
|
lineage4.2.2.1
|
rs
|
ERR2041780
|
MDR-TB
|
lineage4.2.2.1
|
rs
|
SRR5709991
|
Pre-XDR-TB
|
lineage2.2.2
|
th
|
SRR14807625
|
Pre-XDR-TB
|
lineage4.2.1;lineage4.3.3
|
None
|
SRR847784
|
MDR-TB
|
lineage4.3.3
|
za
|
ERR4831273
|
MDR-TB
|
lineage4.2.2.2
|
de
|
SRR7645902
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR1196534
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR11662552
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13284368
|
Pre-XDR-TB
|
lineage4.8
|
None
|
ERR9806710
|
Pre-XDR-TB
|
lineage4.3.2.1
|
None
|
ERR13292563
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN01925686
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR1035329
|
Pre-XDR-TB
|
lineage4.3.3
|
br
|
ERR4813802
|
MDR-TB
|
lineage2.2.1.1
|
br
|
ERR552442
|
MDR-TB
|
lineage4.8
|
None
|
ERR4020182
|
MDR-TB
|
lineage4.3.4.2.1;lineage4.4.1.1
|
None
|
ERR3148170
|
Pre-XDR-TB
|
lineage4.3.4.2
|
mx
|
SRR23310852
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR1013571
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR7910940
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
SRR1166146
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
ERR4553759
|
Pre-XDR-TB
|
lineage4.8
|
None
|
ERR11488798
|
RR-TB
|
lineage1.1.3.1
|
None
|
ERR2517120
|
Pre-XDR-TB
|
lineage4.8
|
gb
|
ERR13288968
|
MDR-TB
|
lineage4.1.1.3
|
None
|
ERR11082852
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
ERR2514005
|
RR-TB
|
lineage3
|
gb
|
SAMN02584635
|
MDR-TB
|
lineage4.2.1
|
md
|
ERR13291105
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR13232709
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR15368852
|
MDR-TB
|
lineage4.2.2
|
None
|
ERR13261333
|
XDR-TB
|
lineage4.3.4.2
|
None
|
ERR4796605
|
MDR-TB
|
lineage3.1.2.1
|
in
|
ERR8773809
|
RR-TB
|
lineage2.2.1
|
None
|
SRR7070079
|
MDR-TB
|
lineage3
|
None
|
SRR28045938
|
MDR-TB
|
lineage1.1.2
|
None
|
SRR21887767
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR1352345
|
RR-TB
|
lineage2.2.2
|
cn
|
ERR1352346
|
RR-TB
|
lineage2.2.2
|
cn
|
ERR11488412
|
Pre-XDR-TB
|
lineage4.8
|
None
|
ERR553163
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR11466001
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR13290321
|
MDR-TB
|
lineage3
|
None
|
SRR23310902
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR9119486
|
MDR-TB
|
lineage4.8
|
None
|
SRR5818695
|
MDR-TB
|
lineage1.1.2
|
dj
|
SRR29017048
|
MDR-TB
|
lineage4
|
None
|
ERR2041699
|
MDR-TB
|
lineage4.2.2.1
|
None
|
SRR29017188
|
MDR-TB
|
lineage4
|
None
|
SAMN02403570
|
MDR-TB
|
lineage4.3.3
|
za
|
ERR2510271
|
MDR-TB
|
lineage3
|
pk
|
ERR10748496
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
ERR12311985
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR3085309
|
MDR-TB
|
lineage1.1.2
|
None
|
SRR3085311
|
Pre-XDR-TB
|
lineage1.1.2
|
None
|
ERR4830841
|
Pre-XDR-TB
|
lineage1.1.2
|
et
|
ERR11465581
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR4831744
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR5709969
|
MDR-TB
|
lineage4.5
|
th
|
ERR4814541
|
MDR-TB
|
lineage3.1.1
|
gb
|
SRR5709988
|
Pre-XDR-TB
|
lineage2.2.2
|
th
|
SRR25827558
|
XDR-TB
|
lineage2.2.1.1;lineage2.2.1.2;lineage3
|
None
|
SRR2469378
|
MDR-TB
|
lineage4.1.1.1
|
None
|
ERR1352348
|
RR-TB
|
lineage2.2.2
|
cn
|
SRR5153859
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
SRR17657981
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14801360
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR23311048
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR5865532
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR4831434
|
Pre-XDR-TB
|
lineage3
|
None
|
ERR3287688
|
MDR-TB
|
lineage4.3.4.2
|
pe
|
ERR2516632
|
MDR-TB
|
lineage4.8
|
pe
|
SRR19241804
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR023483
|
RR-TB
|
lineage4.1.1.3
|
None
|
SAMN02360565
|
Pre-XDR-TB
|
lineage2.2.2
|
kr
|
ERR4827974
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN02403480
|
MDR-TB
|
lineage4.3.2
|
za
|
SRR10380197
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR3132228
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10306031
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1062855
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4820930
|
MDR-TB
|
lineage3.1.1
|
gb
|
ERR4829382
|
MDR-TB
|
lineage4.8
|
it
|
SRR6785493
|
MDR-TB
|
lineage4.3.3
|
None
|
SAMEA2533723
|
MDR-TB
|
lineage4.8
|
uz
|
SRR14807638
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR11043136
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR1163051
|
MDR-TB
|
lineage3
|
None
|
ERR4813344
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR21576689
|
MDR-TB
|
lineage2.1
|
None
|
SRR14802061
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR2062305
|
RR-TB
|
lineage2.2.2
|
None
|
SRR17657985
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR552443
|
MDR-TB
|
lineage4.8
|
None
|
SRR5535919
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR1162483
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28351370
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR28393746
|
MDR-TB
|
lineage4.1.1.3
|
None
|
ERR4872151
|
MDR-TB
|
lineage4.8
|
None
|
ERR2653069
|
MDR-TB
|
lineage4.1.1.3
|
None
|
ERR5865699
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29539277
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4809304
|
XDR-TB
|
lineage4.3.2.1
|
za
|
ERR4827945
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11082309
|
RR-TB
|
lineage2.2.1
|
None
|
ERR4797415
|
Pre-XDR-TB
|
lineage1.1.2
|
in
|
ERR2516502
|
MDR-TB
|
lineage4.8
|
pe
|
ERR13296441
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR4831330
|
Pre-XDR-TB
|
lineage2.2.1
|
de
|
SRR26937123
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8665876
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR1193898
|
MDR-TB
|
lineage4.3.2.1
|
sz
|
ERR11081799
|
MDR-TB
|
lineage4.8
|
None
|
ERR13276038
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR17657966
|
MDR-TB
|
lineage2.2.1.2;lineage4.9
|
None
|
SRR29017399
|
MDR-TB
|
lineage4.8
|
None
|
ERR4817072
|
RR-TB
|
lineage3
|
None
|
SRR25207176
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR7975636
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR14801928
|
MDR-TB
|
lineage4.2.1;lineage4.3.3
|
None
|
SRR25534333
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10680138
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4813211
|
Pre-XDR-TB
|
lineage4.8
|
pe
|
SRR11662443
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1169042
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR28351234
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR29017149
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR10680032
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2041683
|
MDR-TB
|
lineage4.2.2.1
|
rs
|
ERR2041789
|
Pre-XDR-TB
|
lineage4.2.2.1
|
rs
|
SRR1181198
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR16058214
|
RR-TB
|
lineage1.1.2
|
None
|
SRR18002897
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11050281
|
MDR-TB
|
lineage4.5
|
None
|
SRR1166195
|
MDR-TB
|
lineage4.3.3
|
None
|
SAMN02053803
|
MDR-TB
|
lineage4.3.3
|
za
|
SAMN02628522
|
Pre-XDR-TB
|
lineage3
|
ir
|
SRR023478
|
MDR-TB
|
lineage4.1.1.3
|
None
|
SRR16370452
|
MDR-TB
|
lineage4.8
|
None
|
SRR1166166
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR7341695
|
MDR-TB
|
lineage4
|
ro
|
SRR1723663
|
MDR-TB
|
lineage2.2.1
|
cn
|
SRR1180395
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR8217901
|
MDR-TB
|
lineage1.1.1.1
|
None
|
ERR12118065
|
MDR-TB
|
lineage4.1.1.3
|
None
|
SRR28498710
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR4830668
|
MDR-TB
|
lineage4.1.2.1
|
dz
|
ERR1555041
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR1013658
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR29017012
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4796802
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4828844
|
Pre-XDR-TB
|
lineage4
|
None
|
ERR10680180
|
MDR-TB
|
lineage4.8
|
None
|
SRR18054789
|
MDR-TB
|
lineage4.5
|
None
|
ERR1035070
|
Pre-XDR-TB
|
lineage4.3.2.1;lineage4.4.1.1
|
za
|
ERR10762405
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4800217
|
MDR-TB
|
lineage4.2.2.2
|
in
|
ERR4813507
|
MDR-TB
|
lineage4.1.1.3
|
pe
|
ERR2307398
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR9971354
|
RR-TB
|
lineage2.2.1
|
None
|
SRR28498612
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR29274229
|
RR-TB
|
lineage4.8
|
None
|
SRR26331614
|
Pre-XDR-TB
|
lineage4.3.2.1
|
None
|
ERR7975654
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR13284758
|
MDR-TB
|
lineage4.8
|
None
|
ERR10680076
|
MDR-TB
|
lineage6.3.1
|
None
|
SAMEA5569880
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR4831525
|
Pre-XDR-TB
|
lineage3
|
pk
|
ERR3148190
|
MDR-TB
|
lineage4.1.2.1
|
mx
|
SRR28498693
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR29274091
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR751484
|
MDR-TB
|
lineage4.8
|
pe
|
DRR130129
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR1048871
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR2600414
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR2653237
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR14802128
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR2041749
|
MDR-TB
|
lineage4.2.2.1
|
rs
|
SRR3611832
|
MDR-TB
|
lineage4.9
|
None
|
ERR4831246
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4831433
|
Pre-XDR-TB
|
lineage3
|
None
|
ERR4872080
|
MDR-TB
|
lineage4.8
|
None
|
SRR28351523
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR2041767
|
RR-TB
|
lineage4.1.2.1
|
rs
|
SRR14782525
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR553350
|
MDR-TB
|
lineage4.3.2.1
|
sz
|
SRR1172075
|
Pre-XDR-TB
|
lineage3
|
None
|
SRR26937073
|
MDR-TB
|
lineage4.5
|
None
|
ERR552443_ERR552442
|
MDR-TB
|
lineage4.8
|
None
|
SAMN02584665
|
MDR-TB
|
lineage4.3.3
|
md
|
SRR10379928
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR10040465
|
Pre-XDR-TB
|
lineage4.5
|
None
|
SRR1169041
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR11465567
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR1180435
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR1213943
|
RR-TB
|
lineage4.8
|
kz
|
SRR3082074
|
MDR-TB
|
lineage1.1.2
|
None
|
ERR10762413
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
SRR1166318
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR11080937
|
MDR-TB
|
lineage3
|
None
|
ERR2200093
|
Pre-XDR-TB
|
lineage4.2.2.1
|
rs
|
ERR4829095
|
Pre-XDR-TB
|
lineage1.1.2
|
dj
|
ERR11466515
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR12118060
|
MDR-TB
|
lineage4.1.1.3
|
None
|
SRR14801498
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR8665501
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11488903
|
RR-TB
|
lineage1.1.3.1
|
None
|
ERR7975687
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR2100385
|
MDR-TB
|
lineage3
|
None
|
SRR28498422
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR5153903
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR9029859
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR14801679
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR1642938
|
RR-TB
|
lineage4.1.2.1
|
None
|
ERR13284875
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR3132168
|
MDR-TB
|
lineage4.3.2
|
None
|
ERR2706966
|
MDR-TB
|
lineage4.3.3;lineage4.6.1.2
|
cd
|
ERR2515661
|
MDR-TB
|
lineage2.2.1
|
za
|
ERR2653212
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR3287708
|
MDR-TB
|
lineage4.8
|
pe
|
ERR3256135
|
MDR-TB
|
lineage1.2.1.2
|
ph
|
ERR2041718
|
Pre-XDR-TB
|
lineage4.2.2.1
|
rs
|
SRR8651638
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
SRR29289256
|
MDR-TB
|
lineage3
|
None
|
ERR11044680
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR7737803
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10380061
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR833097
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR10610278
|
MDR-TB
|
lineage4.1.1.3
|
None
|
ERR4815874
|
MDR-TB
|
lineage4.8
|
gb
|
ERR11465988
|
MDR-TB
|
lineage4.4.1.1
|
None
|