Run ID: ERR4812321
Sample name:
Date: 01-04-2023 11:59:56
Number of reads: 419963
Percentage reads mapped: 99.58
Strain: lineage4.1.2
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.1 | Euro-American | T;X;H | None | 0.99 |
lineage4.1.2 | Euro-American | T;H | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491591 | p.Lys270Met | missense_variant | 1.0 |
mshA | 575679 | p.Asn111Ser | missense_variant | 1.0 |
ccsA | 620171 | p.Cys94Tyr | missense_variant | 0.2 |
rpoB | 760115 | c.309C>T | synonymous_variant | 1.0 |
rpoB | 762986 | p.Gln1060His | missense_variant | 0.13 |
rpoC | 765150 | p.Gly594Glu | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 777197 | c.1284C>T | synonymous_variant | 0.17 |
mmpL5 | 777964 | p.Val173Phe | missense_variant | 0.11 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rplC | 800869 | p.Asn21Asp | missense_variant | 0.14 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1473872 | n.215A>G | non_coding_transcript_exon_variant | 0.25 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2168481 | p.Val711Ala | missense_variant | 0.22 |
PPE35 | 2169863 | c.750C>T | synonymous_variant | 0.5 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518076 | c.-39C>T | upstream_gene_variant | 1.0 |
kasA | 2518557 | p.Asn148Thr | missense_variant | 0.15 |
kasA | 2519220 | p.Pro369Gln | missense_variant | 0.14 |
folC | 2746977 | p.Asp208Tyr | missense_variant | 0.15 |
pepQ | 2859736 | p.Gly228Val | missense_variant | 0.4 |
pepQ | 2859792 | c.627C>T | synonymous_variant | 0.33 |
pepQ | 2860460 | c.-42G>A | upstream_gene_variant | 0.14 |
Rv2752c | 3066294 | c.-103C>A | upstream_gene_variant | 0.12 |
Rv2752c | 3067037 | c.-846G>T | upstream_gene_variant | 0.18 |
thyX | 3067827 | p.Gly40Val | missense_variant | 0.22 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fbiD | 3339040 | c.-78T>C | upstream_gene_variant | 1.0 |
fbiD | 3339409 | p.Ala98Ser | missense_variant | 0.25 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3474319 | p.Gly105Cys | missense_variant | 0.12 |
Rv3236c | 3612070 | c.1047G>T | synonymous_variant | 0.33 |
clpC1 | 4038407 | c.2297delC | frameshift_variant | 0.12 |
panD | 4043981 | p.Tyr101Asp | missense_variant | 0.18 |
embC | 4241021 | p.Ala387Ser | missense_variant | 0.11 |
embC | 4241149 | p.Cys429* | stop_gained | 0.18 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242803 | p.Val981Leu | missense_variant | 1.0 |
embA | 4243291 | p.Ser20Leu | missense_variant | 0.12 |
embA | 4245014 | c.1782C>A | synonymous_variant | 0.2 |
embB | 4246584 | p.Arg24Pro | missense_variant | 0.33 |
embB | 4247721 | p.Arg403Leu | missense_variant | 0.2 |
embB | 4248043 | c.1530C>G | synonymous_variant | 1.0 |
ubiA | 4269812 | p.Gln8Lys | missense_variant | 0.12 |
ubiA | 4269829 | p.Ser2Asn | missense_variant | 0.14 |
ethA | 4328001 | c.-528G>T | upstream_gene_variant | 0.14 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4408312 | c.-110C>T | upstream_gene_variant | 1.0 |