Run ID: ERR4812502
Sample name:
Date: 01-04-2023 12:07:06
Number of reads: 629778
Percentage reads mapped: 98.81
Strain: lineage4.1.2.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.1 | Euro-American | T;X;H | None | 1.0 |
lineage4.1.2 | Euro-American | T;H | None | 1.0 |
lineage4.1.2.1 | Euro-American (Haarlem) | T1;H1 | RD182 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 8346 | p.Val349Ile | missense_variant | 0.1 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491591 | p.Lys270Met | missense_variant | 1.0 |
mshA | 575679 | p.Asn111Ser | missense_variant | 1.0 |
rpoB | 760115 | c.309C>T | synonymous_variant | 1.0 |
rpoB | 761675 | c.1869G>T | synonymous_variant | 0.12 |
rpoC | 763362 | c.-8G>A | upstream_gene_variant | 0.2 |
rpoC | 763582 | p.Lys71Asn | missense_variant | 0.11 |
rpoC | 765150 | p.Gly594Glu | missense_variant | 1.0 |
rpoC | 766706 | p.Glu1113* | stop_gained | 0.38 |
rpoC | 767108 | p.Gly1247Ser | missense_variant | 0.17 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rplC | 801311 | p.Gly168Glu | missense_variant | 0.15 |
fbiC | 1303289 | p.Ser120Asn | missense_variant | 0.17 |
fbiC | 1305438 | c.2508C>A | synonymous_variant | 0.12 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1475730 | n.2073G>T | non_coding_transcript_exon_variant | 0.25 |
rpsA | 1833600 | p.Glu20Gly | missense_variant | 0.18 |
rpsA | 1833940 | c.399C>A | synonymous_variant | 0.22 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
tlyA | 1918218 | c.279C>A | synonymous_variant | 0.2 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518076 | c.-39C>T | upstream_gene_variant | 1.0 |
eis | 2714867 | p.Gly156Ser | missense_variant | 0.12 |
eis | 2715390 | c.-58C>T | upstream_gene_variant | 0.11 |
ahpC | 2725982 | c.-211G>A | upstream_gene_variant | 0.12 |
ahpC | 2726691 | c.502delC | frameshift_variant | 0.18 |
thyX | 3068152 | c.-208_-207insG | upstream_gene_variant | 0.15 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
Rv3236c | 3612241 | c.876G>T | synonymous_variant | 0.12 |
rpoA | 3878623 | c.-116C>A | upstream_gene_variant | 0.33 |
clpC1 | 4039551 | p.Leu385Pro | missense_variant | 0.15 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242803 | p.Val981Leu | missense_variant | 1.0 |
embA | 4244294 | c.1062G>T | synonymous_variant | 0.13 |
aftB | 4267089 | p.Thr583Ser | missense_variant | 0.11 |
aftB | 4267917 | p.Ser307Thr | missense_variant | 0.11 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |