Run ID: ERR4813321
Sample name:
Date: 01-04-2023 12:40:30
Number of reads: 225708
Percentage reads mapped: 99.51
Strain: lineage4
Drug-resistance: MDR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rpoB | 761155 | p.Ser450Leu | missense_variant | 1.0 | rifampicin |
rpsL | 781822 | p.Lys88Thr | missense_variant | 0.56 | streptomycin |
katG | 2155168 | p.Ser315Thr | missense_variant | 1.0 | isoniazid |
pncA | 2289097 | p.Asp49Asn | missense_variant | 0.5 | pyrazinamide |
embB | 4247431 | p.Met306Ile | missense_variant | 1.0 | ethambutol |
ethA | 4326716 | c.757delT | frameshift_variant | 0.75 | ethionamide, ethionamide |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 6107 | p.Ala290Thr | missense_variant | 0.29 |
gyrB | 6836 | p.Ala533Pro | missense_variant | 0.22 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 8040 | p.Gly247Ser | missense_variant | 0.62 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
rpoB | 761880 | p.Ala692Thr | missense_variant | 1.0 |
rpoB | 762288 | p.Asp828Tyr | missense_variant | 0.13 |
rpoC | 764817 | p.Val483Gly | missense_variant | 0.86 |
rpoC | 764995 | c.1626C>G | synonymous_variant | 1.0 |
rpoC | 765804 | p.Thr812Ile | missense_variant | 0.5 |
rpoC | 766414 | p.Phe1015Leu | missense_variant | 0.4 |
rpoC | 766453 | c.3084G>A | synonymous_variant | 0.22 |
rpoC | 766482 | p.Arg1038Leu | missense_variant | 0.22 |
rpoC | 766537 | p.Glu1056Asp | missense_variant | 0.17 |
mmpL5 | 777278 | c.1203G>A | synonymous_variant | 0.67 |
mmpL5 | 778414 | p.Phe23Leu | missense_variant | 0.25 |
mmpL5 | 778979 | c.-499G>A | upstream_gene_variant | 0.18 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1303060 | p.Ala44Ser | missense_variant | 0.5 |
embR | 1416513 | p.Gln279Lys | missense_variant | 0.25 |
embR | 1416517 | c.831C>A | synonymous_variant | 0.25 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
katG | 2154459 | c.1653C>T | synonymous_variant | 0.71 |
katG | 2155017 | c.1095G>A | synonymous_variant | 0.55 |
Rv1979c | 2222523 | c.642C>T | synonymous_variant | 0.14 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518919 | p.Gly269Ser | missense_variant | 0.67 |
folC | 2747453 | p.Arg49Gln | missense_variant | 1.0 |
thyA | 3073868 | p.Thr202Ala | missense_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
Rv3083 | 3449896 | p.His465Asn | missense_variant | 0.4 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3474297 | p.Tyr97* | stop_gained | 0.14 |
Rv3236c | 3612230 | p.Ala296Val | missense_variant | 0.4 |
fbiB | 3642618 | p.Asp362Asn | missense_variant | 1.0 |
clpC1 | 4038287 | c.2418C>T | synonymous_variant | 1.0 |
ethA | 4327197 | p.Gly93* | stop_gained | 0.25 |
ethA | 4327527 | c.-54G>T | upstream_gene_variant | 0.2 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
whiB6 | 4338600 | c.-79T>C | upstream_gene_variant | 0.38 |
gid | 4407720 | c.483C>G | synonymous_variant | 0.55 |
gid | 4408003 | p.Asp67Gly | missense_variant | 0.86 |
gid | 4408156 | p.Leu16Arg | missense_variant | 1.0 |