Run ID: ERR4814597
Sample name:
Date: 01-04-2023 13:23:20
Number of reads: 4926723
Percentage reads mapped: 99.39
Strain: lineage4.7
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.7 | Euro-American (mainly T) | T1;T5 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rrs | 1472733 | n.888G>A | non_coding_transcript_exon_variant | 0.33 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 6415 | c.-887G>A | upstream_gene_variant | 1.0 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 0.2 |
rrs | 1473145 | n.1300C>T | non_coding_transcript_exon_variant | 0.11 |
rrs | 1473166 | n.1321G>A | non_coding_transcript_exon_variant | 0.13 |
rrs | 1473172 | n.1327T>G | non_coding_transcript_exon_variant | 0.13 |
rrs | 1473173 | n.1328C>T | non_coding_transcript_exon_variant | 0.14 |
rrs | 1473202 | n.1357C>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1473959 | n.309_310delTG | non_coding_transcript_exon_variant | 0.25 |
rrl | 1474294 | n.637C>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474780 | n.1123C>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1474783 | n.1126G>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1474784 | n.1127C>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1474790 | n.1133C>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1474794 | n.1137C>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1474823 | n.1166C>G | non_coding_transcript_exon_variant | 0.25 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
alr | 3840618 | p.Asp268Gly | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embB | 4249732 | c.3219C>G | synonymous_variant | 1.0 |
ubiA | 4269933 | c.-100C>G | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |