Run ID: ERR4815137
Sample name:
Date: 01-04-2023 13:43:14
Number of reads: 30902832
Percentage reads mapped: 97.33
Strain: lineage4.1
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.1 | Euro-American | T;X;H | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rrs | 1472733 | n.888G>A | non_coding_transcript_exon_variant | 0.6 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
rpoC | 765150 | p.Gly594Glu | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 777310 | p.Gly391Ser | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472507 | n.662C>G | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472517 | n.672T>A | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472518 | n.673G>T | non_coding_transcript_exon_variant | 0.28 |
rrs | 1472530 | n.685G>A | non_coding_transcript_exon_variant | 0.47 |
rrs | 1472537 | n.692C>T | non_coding_transcript_exon_variant | 0.55 |
rrs | 1472544 | n.699C>A | non_coding_transcript_exon_variant | 0.62 |
rrs | 1472545 | n.700A>T | non_coding_transcript_exon_variant | 0.62 |
rrs | 1472566 | n.721G>A | non_coding_transcript_exon_variant | 0.68 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 0.69 |
rrs | 1472579 | n.734G>C | non_coding_transcript_exon_variant | 0.59 |
rrs | 1472580 | n.735C>T | non_coding_transcript_exon_variant | 0.48 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 0.68 |
rrs | 1472598 | n.753A>C | non_coding_transcript_exon_variant | 0.62 |
rrs | 1472599 | n.754G>T | non_coding_transcript_exon_variant | 0.63 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.37 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.42 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.62 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.61 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.62 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 0.54 |
rrs | 1472803 | n.958T>A | non_coding_transcript_exon_variant | 0.51 |
rrs | 1472824 | n.979T>A | non_coding_transcript_exon_variant | 0.28 |
rrs | 1472827 | n.982G>T | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472828 | n.983T>C | non_coding_transcript_exon_variant | 0.12 |
rrs | 1473192 | n.1347A>G | non_coding_transcript_exon_variant | 0.14 |
rrs | 1473199 | n.1356delA | non_coding_transcript_exon_variant | 0.12 |
rrs | 1473205 | n.1360T>C | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476225 | n.2568T>G | non_coding_transcript_exon_variant | 0.1 |
rrl | 1476250 | n.2593C>G | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476251 | n.2594T>C | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476257 | n.2600G>C | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.24 |
rrl | 1476280 | n.2623A>C | non_coding_transcript_exon_variant | 0.18 |
rpsA | 1833807 | p.Leu89Arg | missense_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3474774 | c.768G>C | synonymous_variant | 1.0 |
whiB7 | 3568418 | c.250_261delGGACGTCCGCGC | conservative_inframe_deletion | 1.0 |
alr | 3841505 | c.-85C>T | upstream_gene_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242803 | p.Val981Leu | missense_variant | 1.0 |
embB | 4249408 | c.2895G>A | synonymous_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |