Rv3197A - c.250_261delGGACGTCCGCGC
Drug resistance types
66 Sensitive
6 RR-TB
8 HR-TB
73 MDR-TB
60 Pre-XDR-TB
8 XDR-TB
9 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.1 | 44 |
| lineage2.2.2 | 67 |
| lineage2.2.1 | 34 |
| lineage1.1.1.1 | 2 |
| lineage2.2 | 17 |
| lineage4.6.2.2 | 5 |
| lineage2;lineage3 | 1 |
| lineage1.2.2.2 | 8 |
| lineage4.6.5 | 2 |
| lineage3 | 22 |
| lineage4 | 4 |
| lineage4.3.3 | 4 |
| lineage3.1 | 1 |
| lineage4.2.1 | 2 |
| lineage1.1.3.1 | 2 |
| lineage2.2.1;lineage4.3 | 1 |
| lineage2.2.1.1 | 3 |
| lineage1.2.2.2;lineage4 | 2 |
| lineage4.3.2 | 1 |
| lineage2.2.1;lineage4.1 | 1 |
| lineage4.1;lineage4.4.1.1 | 1 |
| lineage2.2.1.2 | 1 |
| 1 | |
| lineage4.1.1.3 | 1 |
| lineage4.1.1.2 | 2 |
| lineage2.2.1;lineage2.2.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 230 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR18715110 | Sensitive | lineage4.1 | None | ERR13194009 | Pre-XDR-TB | lineage2.2.2 | None | SRR4423174 | Pre-XDR-TB | lineage2.2.2 | None | SRR10305614 | MDR-TB | lineage2.2.1 | None | SRR6458411 | Pre-XDR-TB | lineage2.2.1 | None | ERR552157 | Pre-XDR-TB | lineage2.2.2 | None | SRR22250097 | HR-TB | lineage1.1.1.1 | None | ERR4553904 | Pre-XDR-TB | lineage2.2 | None | SRR10040353 | MDR-TB | lineage2.2.2 | None | ERR5917684 | Pre-XDR-TB | lineage2.2.1 | by | SRR11444048 | Sensitive | lineage4.6.2.2 | None | SRR11444275 | Sensitive | lineage4.6.2.2 | None | ERR4829977 | RR-TB | lineage2;lineage3 | pk | SRR11444222 | Sensitive | lineage4.6.2.2 | None | SRR26936972 | MDR-TB | lineage1.1.1.1 | None | SRR25206962 | Pre-XDR-TB | lineage2.2.1 | None | ERR4553664 | MDR-TB | lineage2.2 | None | ERR4553630 | MDR-TB | lineage2.2 | None | ERR4553898 | MDR-TB | lineage2.2.2 | None | ERR4553774 | Pre-XDR-TB | lineage2.2 | None | SRR18715339 | Pre-XDR-TB | lineage2.2.1 | None | SRR21678366 | Other | lineage1.2.2.2 | None | ERR13245559 | Pre-XDR-TB | lineage2.2.2 | None | SRR4423153 | Pre-XDR-TB | lineage2.2.2 | None | ERR13194076 | Pre-XDR-TB | lineage2.2.2 | None | SRR29055413 | Other | lineage1.2.2.2 | None | ERR4553579 | MDR-TB | lineage2.2.2 | None | SRR11871414 | XDR-TB | lineage2.2.1 | None | ERR4553702 | MDR-TB | lineage2.2 | None | ERR13267489 | RR-TB | lineage4.6.5 | None | SRR1723645 | MDR-TB | lineage2.2.1 | cn | SRR29017145 | MDR-TB | lineage2.2.2 | None | ERR4821899 | Other | lineage4.1 | None | SRR14088363 | Sensitive | lineage3 | None | SRR6832540 | Sensitive | lineage4.1 | None | SRR28868439 | Sensitive | lineage3 | None | SRR16096975 | Other | lineage4 | None | ERR4553578 | MDR-TB | lineage2.2.2 | None | SRR29017417 | MDR-TB | lineage2.2.2 | None | SRR5153810 | MDR-TB | lineage4.3.3 | None | ERR13194019 | Pre-XDR-TB | lineage2.2.2 | None | ERR4553868 | MDR-TB | lineage2.2 | None | ERR5864942 | Pre-XDR-TB | lineage2.2 | None | SRR29017428 | MDR-TB | lineage1.2.2.2 | None | SRR29017020 | Pre-XDR-TB | lineage2.2.2 | None | SRR30182593 | Sensitive | lineage3.1 | None | SRR19304013 | Sensitive | lineage4.1 | None | SRR21747011 | RR-TB | lineage2.2.2 | None | ERR4553816 | MDR-TB | lineage2.2 | None | SRR29126242 | Sensitive | lineage4.1 | None | ERR8665768 | Pre-XDR-TB | lineage2.2.1 | None | ERR13284997 | MDR-TB | lineage4.2.1 | None | SRR29017123 | Pre-XDR-TB | lineage2.2.2 | None | SRR29017656 | MDR-TB | lineage2.2.2 | None | SRR21690332 | Sensitive | lineage4.1 | None | SRR29017708 | MDR-TB | lineage2.2.2 | None | ERR4553615 | MDR-TB | lineage1.1.3.1 | None | ERR13285542 | Sensitive | lineage4.1 | None | SRR1172033 | Sensitive | lineage4.1 | None | ERR4553659 | MDR-TB | lineage2.2 | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | ERR13194018 | Pre-XDR-TB | lineage2.2.2 | None | SRR28868625 | Sensitive | lineage2.2.2 | None | SRR29017408 | MDR-TB | lineage2.2.2 | None | SRR21689442 | MDR-TB | lineage4.1 | None | SRR29356659 | Sensitive | lineage4.1 | None | SRR11444298 | Sensitive | lineage4.6.2.2 | None | SRR29017176 | MDR-TB | lineage2.2.2 | None | SRR29016967 | Pre-XDR-TB | lineage2.2.2 | None | SRR29017142 | MDR-TB | lineage2.2.2 | None | SRR29017152 | Pre-XDR-TB | lineage2.2.2 | None | SRR11871421 | Pre-XDR-TB | lineage2.2.1 | None | ERR4797499 | Pre-XDR-TB | lineage2.2.1 | in | SRR29017096 | MDR-TB | lineage2.2.2 | None | ERR4831097 | Pre-XDR-TB | lineage2.2.1 | None | SRR29016818 | Pre-XDR-TB | lineage2.2.2 | None | SRR7517692 | HR-TB | lineage3 | None | ERR9634292 | Sensitive | lineage2.2.2 | None | ERR4829701 | HR-TB | lineage3 | it | SRR16156718 | Pre-XDR-TB | lineage4.3.3 | None | SRR17856666 | Sensitive | lineage3 | None | SRR25827802 | Pre-XDR-TB | lineage2.2.1;lineage4.3 | None | ERR13245229 | Pre-XDR-TB | lineage2.2.2 | None | SRR1723647 | MDR-TB | lineage2.2.1 | None | ERR13261879 | Sensitive | lineage4 | None | ERR4819832 | Sensitive | lineage4.6.2.2 | gb | SRR24222968 | Sensitive | lineage4.1 | None | ERR4818367 | Sensitive | lineage3 | None | SAMN02419683 | Sensitive | lineage4.1 | by | SRR29017639 | MDR-TB | lineage2.2.2 | None | SRR29017439 | MDR-TB | lineage2.2.2 | None | SRR28646102 | Sensitive | lineage4.1 | None | SRR28046072 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR11773727 | Pre-XDR-TB | lineage4.3.3 | None | ERR4814554 | Sensitive | lineage4.1 | None | ERR4553409 | MDR-TB | lineage1.2.2.2;lineage4 | None | ERR552158 | Pre-XDR-TB | lineage2.2.2 | None | ERR9993237 | XDR-TB | lineage2.2.1 | None | SRR4423146 | Pre-XDR-TB | lineage2.2.2 | None | SRR7070528 | Sensitive | lineage3 | None | ERR234594 | MDR-TB | lineage4.1 | ru | ERR2509676 | Sensitive | lineage3 | gb | ERR2516452 | Sensitive | lineage4.3.2 | pe | ERR4821780 | HR-TB | lineage2.2.2 | gb | ERR2512860 | Sensitive | lineage3 | gb | ERR5918016 | XDR-TB | lineage2.2.1 | za | ERR5918018 | XDR-TB | lineage2.2.1 | za | ERR067732 | MDR-TB | lineage2.2.1;lineage4.1 | ru | ERR2041793 | MDR-TB | lineage4.1 | rs | SRR6824468 | MDR-TB | lineage2.2.1 | cn | SRR6824578 | MDR-TB | lineage2.2.1 | cn | ERR234627 | MDR-TB | lineage4.1 | ru | SRR19303789 | Sensitive | lineage4.1 | None | SRR20969426 | Pre-XDR-TB | lineage2.2.2 | None | ERR4553889 | Pre-XDR-TB | lineage2.2 | None | ERR4816804 | Other | lineage4.1 | None | SRR28351475 | Pre-XDR-TB | lineage2.2.1 | None | ERR4553725 | MDR-TB | lineage2.2 | None | SRR29093370 | MDR-TB | lineage2.2.2 | None | DRR185111 | Sensitive | lineage2.2.2 | vn | SRR5065328 | Other | lineage2.2.2 | vn | ERR4553850 | MDR-TB | lineage2.2 | None | ERR5864943 | Pre-XDR-TB | lineage2.2.1 | None | ERR4819765 | Other | lineage4.1 | None | SAMN03246387 | MDR-TB | lineage2.2.1 | None | SRR6832436 | Sensitive | lineage4.1 | None | ERR4553671 | MDR-TB | lineage2.2 | None | ERR4810790 | Pre-XDR-TB | lineage2.2.1 | cn | SRR6785360 | Sensitive | lineage4.1 | None | ERR4800381 | XDR-TB | lineage2.2.1 | in | ERR4553523 | MDR-TB | lineage1.2.2.2 | None | SRR10209206 | Sensitive | lineage2.2.2 | None | ERR5865588 | MDR-TB | lineage4.3.3 | None | ERR4553872 | MDR-TB | lineage2.2.2 | None | SRR6785481 | Sensitive | lineage4.1 | None | ERR11465162 | Sensitive | lineage4.1;lineage4.4.1.1 | None | ERR8665770 | Pre-XDR-TB | lineage2.2.1 | None | ERR5864941 | Pre-XDR-TB | lineage2.2.1 | None | SRR11972235 | MDR-TB | lineage2.2.2 | None | ERR4553944 | MDR-TB | lineage2.2.2 | None | SRR1169080 | Sensitive | lineage4.1 | None | SRR25827328 | Pre-XDR-TB | lineage2.2.1.2 | None | ERR13291540 | Sensitive | lineage4 | None | SRR29017151 | MDR-TB | lineage2.2.2 | None | ERR4553877 | MDR-TB | lineage2.2.2 | None | ERR13285679 | MDR-TB | lineage4.1 | None | ERR4814417 | Sensitive | lineage4.1 | None | SRR29017689 | MDR-TB | lineage2.2.2 | None | ERR13193980 | XDR-TB | lineage2.2.2 | None | ERR11043747 | Sensitive | lineage4.1 | None | ERR4799636 | Pre-XDR-TB | lineage2.2.1 | None | SRR1163357 | Sensitive | lineage4.1 | None | SRR1162991 | Sensitive | lineage4.1 | None | ERR13194094 | Pre-XDR-TB | lineage2.2.2 | None | ERR11081750 | Sensitive | lineage4.1 | None | SRR29341539 | Pre-XDR-TB | lineage2.2.2 | None | SRR4423139 | Pre-XDR-TB | lineage2.2.2 | None | SRR29017433 | MDR-TB | lineage1.1.3.1 | None | SRR1723646 | MDR-TB | lineage2.2.1 | None | SRR16087913 | XDR-TB | lineage2.2.1 | None | SRR29017120 | MDR-TB | lineage1.2.2.2 | None | ERR4553662 | MDR-TB | lineage2.2 | None | ERR4457893 | Sensitive | lineage4 | None | SRR6484936 | Sensitive | lineage4.1 | None | SRR29017412 | MDR-TB | lineage2.2.2 | None | SRR29017045 | Pre-XDR-TB | lineage2.2.2 | None | SRR27450303 | Sensitive | lineage3 | None | ERR13194001 | Pre-XDR-TB | lineage2.2.2 | None | ERR4553825 | MDR-TB | lineage2.2 | None | ERR11068876 | MDR-TB | lineage2.2.1 | None | SRR25827315 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR29016888 | MDR-TB | lineage2.2.2 | None | SRR22048472 | Sensitive | lineage4.1 | None | ERR4553412 | MDR-TB | None | SRR29017676 | MDR-TB | lineage1.2.2.2;lineage4 | None | ERR13245251 | Pre-XDR-TB | lineage2.2.2 | None | SRR11662402 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR13260924 | Sensitive | lineage3 | None | SRR6480565 | HR-TB | lineage2.2.2 | None | SRR6964572 | MDR-TB | lineage3 | None | SRR6964641 | Sensitive | lineage3 | None | ERR2510489 | RR-TB | lineage4.6.5 | pk | SRR6964601 | HR-TB | lineage3 | None | SRR6964620 | Sensitive | lineage3 | None | ERR2510596 | RR-TB | lineage3 | pk | ERR4829048 | Pre-XDR-TB | lineage3 | pk | SRR6964537 | Sensitive | lineage3 | None | SRR14088391 | Pre-XDR-TB | lineage3 | None | ERR4553496 | MDR-TB | lineage1.2.2.2 | None | ERR4553939 | MDR-TB | lineage2.2.2 | None | SRR20969645 | Pre-XDR-TB | lineage2.2.2 | None | ERR4800209 | HR-TB | lineage2.2.1 | in | ERR4797870 | Pre-XDR-TB | lineage2.2.1 | in | ERR11067255 | Sensitive | lineage4.1 | None | ERR4553603 | MDR-TB | lineage2.2 | None | SRR16088291 | Sensitive | lineage4.1 | None | ERR13267005 | XDR-TB | lineage2.2.1 | None | SRR6458420 | Pre-XDR-TB | lineage2.2.1 | None | SRR28045962 | Sensitive | lineage2.2.2 | None | SRR6650151 | Sensitive | lineage1.2.2.2 | None | ERR4829091 | Sensitive | lineage4.1 | it | ERR4815137 | Sensitive | lineage4.1 | gb | ERR4817426 | Sensitive | lineage4.1 | gb | ERR4818134 | Sensitive | lineage4.1 | gb | ERR4821067 | Sensitive | lineage4.1 | gb | ERR4813751 | MDR-TB | lineage4.1.1.3 | br | ERR133874 | Sensitive | lineage4.1 | ru | ERR137251 | Sensitive | lineage4.1 | ru | ERR4831455 | MDR-TB | lineage3 | None | ERR4831470 | Pre-XDR-TB | lineage3 | None | SRR4423148 | Pre-XDR-TB | lineage2.2.2 | None | SRR12882015 | HR-TB | lineage3 | None | SRR29016870 | MDR-TB | lineage1.2.2.2 | None | ERR4972539 | Pre-XDR-TB | lineage4.1.1.2 | None | ERR4972586 | Pre-XDR-TB | lineage4.1.1.2 | None | SRR19303911 | Sensitive | lineage4.1 | None | SRR29017395 | MDR-TB | lineage2.2.2 | None | SRR29017383 | MDR-TB | lineage2.2.2 | None | SRR29017122 | MDR-TB | lineage2.2.2 | None | SRR5065580 | Other | lineage2.2.2 | vn | SRR5067716 | Other | lineage2.2.2 | vn | SRR22048414 | Sensitive | lineage4.1 | None | SRR5073643 | Sensitive | lineage2.2.2 | vn | SRR5073809 | Sensitive | lineage2.2.1;lineage2.2.2 | vn | ERR4553893 | Pre-XDR-TB | lineage2.2 | None | SRR5152895 | Pre-XDR-TB | lineage2.2.1 | None | SRR28045256 | RR-TB | lineage2.2.2 | None | ERR2041792 | MDR-TB | lineage4.1 | None | ERR11069110 | MDR-TB | lineage4.2.1 | None | ERR4553534 | MDR-TB | lineage2.2.2 | None |
|---|
