TB-Profiler result

Run: ERR4815167
Summary

Run ID: ERR4815167

Sample name:

Date: 01-04-2023 13:42:42

Number of reads: 1397069

Percentage reads mapped: 99.92

Strain: lineage4.9

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 8776 p.Asp492Gly missense_variant 0.1
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrl 1474555 n.901dupG non_coding_transcript_exon_variant 0.18
rrl 1474723 n.1066G>T non_coding_transcript_exon_variant 0.14
rrl 1475143 n.1486G>A non_coding_transcript_exon_variant 0.33
rrl 1475713 n.2056C>T non_coding_transcript_exon_variant 0.12
PPE35 2170048 p.Leu189Val missense_variant 0.12
ahpC 2726338 p.Val49Gly missense_variant 0.27