Run ID: ERR4815816
Sample name:
Date: 01-04-2023 14:04:48
Number of reads: 3257136
Percentage reads mapped: 92.23
Strain: lineage4.5
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.5 | Euro-American | H;T | RD122 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7451 | c.150C>T | synonymous_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 7892 | c.591G>A | synonymous_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
ccsA | 620029 | c.139C>T | synonymous_variant | 1.0 |
rpoB | 762236 | c.2430G>T | synonymous_variant | 0.12 |
rpoB | 762245 | c.2439G>T | synonymous_variant | 0.11 |
rpoB | 762254 | c.2448T>C | synonymous_variant | 0.12 |
rpoB | 762257 | c.2451C>G | synonymous_variant | 0.12 |
rpoC | 762899 | c.-471G>T | upstream_gene_variant | 0.23 |
rpoC | 762920 | c.-450C>T | upstream_gene_variant | 0.26 |
rpoC | 762929 | c.-441G>C | upstream_gene_variant | 0.25 |
rpoC | 762959 | c.-411G>T | upstream_gene_variant | 0.24 |
rpoC | 762971 | c.-399G>C | upstream_gene_variant | 0.2 |
rpoC | 762983 | c.-387C>T | upstream_gene_variant | 0.16 |
rpoC | 762989 | c.-381G>A | upstream_gene_variant | 0.15 |
rpoC | 762995 | c.-375G>T | upstream_gene_variant | 0.13 |
rpoB | 763002 | c.3197dupA | frameshift_variant | 0.12 |
rpoB | 763006 | c.3201delC | frameshift_variant | 0.13 |
rpoB | 763017 | p.Gln1071Glu | missense_variant | 0.13 |
rpoC | 763528 | c.159G>A | synonymous_variant | 0.25 |
rpoC | 763534 | c.165T>C | synonymous_variant | 0.25 |
rpoC | 763537 | c.168C>G | synonymous_variant | 0.26 |
rpoC | 763546 | c.177A>G | synonymous_variant | 0.3 |
rpoC | 763570 | c.201G>C | synonymous_variant | 0.3 |
rpoC | 763573 | c.204G>C | synonymous_variant | 0.3 |
rpoC | 763594 | c.225C>T | synonymous_variant | 0.27 |
rpoC | 763622 | p.Ala85Ser | missense_variant | 0.15 |
rpoC | 763627 | p.Lys86Asn | missense_variant | 0.15 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
Rv1258c | 1406101 | p.Pro414Ser | missense_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1471926 | n.81C>T | non_coding_transcript_exon_variant | 0.17 |
rrs | 1471929 | n.84C>G | non_coding_transcript_exon_variant | 0.17 |
rrs | 1471930 | n.85G>T | non_coding_transcript_exon_variant | 0.17 |
rrs | 1471932 | n.87A>G | non_coding_transcript_exon_variant | 0.18 |
rrs | 1471934 | n.89A>G | non_coding_transcript_exon_variant | 0.18 |
rrs | 1471936 | n.91A>G | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472085 | n.240C>T | non_coding_transcript_exon_variant | 0.23 |
rrs | 1472106 | n.261G>A | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472107 | n.262A>G | non_coding_transcript_exon_variant | 0.44 |
rrs | 1472108 | n.263C>T | non_coding_transcript_exon_variant | 0.44 |
rrs | 1472112 | n.267C>T | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472122 | n.277G>T | non_coding_transcript_exon_variant | 0.56 |
rrs | 1472123 | n.278A>T | non_coding_transcript_exon_variant | 0.56 |
rrs | 1472124 | n.279C>T | non_coding_transcript_exon_variant | 0.56 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.72 |
rrs | 1472160 | n.315C>T | non_coding_transcript_exon_variant | 0.71 |
rrs | 1472225 | n.380C>G | non_coding_transcript_exon_variant | 0.78 |
rrs | 1472240 | n.395G>A | non_coding_transcript_exon_variant | 0.73 |
rrs | 1472251 | n.406G>C | non_coding_transcript_exon_variant | 0.79 |
rrs | 1472279 | n.434T>G | non_coding_transcript_exon_variant | 0.56 |
rrs | 1472285 | n.440A>G | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472344 | n.499C>T | non_coding_transcript_exon_variant | 0.83 |
rrs | 1472368 | n.523A>G | non_coding_transcript_exon_variant | 0.86 |
rrs | 1472396 | n.551A>T | non_coding_transcript_exon_variant | 0.85 |
rrs | 1472400 | n.555C>T | non_coding_transcript_exon_variant | 0.85 |
rrs | 1472412 | n.567A>G | non_coding_transcript_exon_variant | 0.85 |
rrs | 1472427 | n.582T>G | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472507 | n.662C>A | non_coding_transcript_exon_variant | 0.62 |
rrs | 1472522 | n.677T>G | non_coding_transcript_exon_variant | 0.82 |
rrs | 1472557 | n.712G>A | non_coding_transcript_exon_variant | 0.93 |
rrs | 1472571 | n.726G>T | non_coding_transcript_exon_variant | 0.9 |
rrs | 1472581 | n.736A>C | non_coding_transcript_exon_variant | 0.89 |
rrs | 1472582 | n.737G>T | non_coding_transcript_exon_variant | 0.89 |
rrs | 1472584 | n.739A>T | non_coding_transcript_exon_variant | 0.89 |
rrs | 1472585 | n.740A>C | non_coding_transcript_exon_variant | 0.89 |
rrs | 1472623 | n.778A>C | non_coding_transcript_exon_variant | 0.89 |
rrs | 1472647 | n.802C>T | non_coding_transcript_exon_variant | 0.91 |
rrs | 1472673 | n.828T>G | non_coding_transcript_exon_variant | 0.9 |
rrs | 1472675 | n.830T>C | non_coding_transcript_exon_variant | 0.89 |
rrs | 1472677 | n.832C>A | non_coding_transcript_exon_variant | 0.89 |
rrs | 1472682 | n.837T>A | non_coding_transcript_exon_variant | 0.89 |
rrs | 1472683 | n.838T>C | non_coding_transcript_exon_variant | 0.89 |
rrs | 1472687 | n.842A>T | non_coding_transcript_exon_variant | 0.89 |
rrs | 1472707 | n.862A>T | non_coding_transcript_exon_variant | 0.92 |
rrs | 1472767 | n.922G>C | non_coding_transcript_exon_variant | 0.92 |
rrs | 1472790 | n.945T>C | non_coding_transcript_exon_variant | 0.85 |
rrs | 1472812 | n.967A>T | non_coding_transcript_exon_variant | 0.73 |
rrs | 1472954 | n.1110delC | non_coding_transcript_exon_variant | 0.86 |
rrs | 1472958 | n.1113_1114insC | non_coding_transcript_exon_variant | 0.87 |
rrs | 1472973 | n.1128A>T | non_coding_transcript_exon_variant | 0.88 |
rrs | 1472986 | n.1141_1142insA | non_coding_transcript_exon_variant | 0.87 |
rrs | 1472989 | n.1145delA | non_coding_transcript_exon_variant | 0.88 |
rrs | 1472996 | n.1151T>C | non_coding_transcript_exon_variant | 0.9 |
rrs | 1473066 | n.1221A>G | non_coding_transcript_exon_variant | 0.75 |
rrs | 1473081 | n.1236C>T | non_coding_transcript_exon_variant | 0.4 |
rrs | 1473088 | n.1243A>G | non_coding_transcript_exon_variant | 0.23 |
rrs | 1473145 | n.1300C>T | non_coding_transcript_exon_variant | 0.33 |
rrs | 1473164 | n.1319C>T | non_coding_transcript_exon_variant | 0.38 |
rrs | 1473166 | n.1321G>A | non_coding_transcript_exon_variant | 0.46 |
rrs | 1473226 | n.1381C>G | non_coding_transcript_exon_variant | 0.8 |
rrs | 1473259 | n.1414C>T | non_coding_transcript_exon_variant | 0.66 |
rrs | 1473276 | n.1431A>G | non_coding_transcript_exon_variant | 0.58 |
rrs | 1473288 | n.1443C>G | non_coding_transcript_exon_variant | 0.47 |
rrs | 1473290 | n.1445C>T | non_coding_transcript_exon_variant | 0.46 |
rrs | 1473292 | n.1447G>T | non_coding_transcript_exon_variant | 0.46 |
rrs | 1473294 | n.1449A>G | non_coding_transcript_exon_variant | 0.46 |
rrs | 1473301 | n.1456T>C | non_coding_transcript_exon_variant | 0.46 |
rrs | 1473315 | n.1470T>C | non_coding_transcript_exon_variant | 0.41 |
rrs | 1473316 | n.1471C>T | non_coding_transcript_exon_variant | 0.38 |
rrs | 1473319 | n.1474C>T | non_coding_transcript_exon_variant | 0.38 |
rrs | 1473324 | n.1479G>A | non_coding_transcript_exon_variant | 0.38 |
rrl | 1474253 | n.596A>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474264 | n.607T>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474265 | n.608G>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474266 | n.609T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474269 | n.612C>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474271 | n.614A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474275 | n.618T>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474287 | n.631_649delCCTTTTCCTCTCCGGAGGA | non_coding_transcript_exon_variant | 0.75 |
rrl | 1474308 | n.651G>T | non_coding_transcript_exon_variant | 0.6 |
rrl | 1474476 | n.819C>T | non_coding_transcript_exon_variant | 0.67 |
rrl | 1474488 | n.831G>A | non_coding_transcript_exon_variant | 0.8 |
rrl | 1474496 | n.839C>T | non_coding_transcript_exon_variant | 0.8 |
rrl | 1474497 | n.840G>C | non_coding_transcript_exon_variant | 0.8 |
rrl | 1474506 | n.849C>G | non_coding_transcript_exon_variant | 0.88 |
rrl | 1474507 | n.850G>T | non_coding_transcript_exon_variant | 0.88 |
rrl | 1474516 | n.859C>T | non_coding_transcript_exon_variant | 0.88 |
rrl | 1474529 | n.872A>C | non_coding_transcript_exon_variant | 0.9 |
rrl | 1474530 | n.873G>A | non_coding_transcript_exon_variant | 0.9 |
rrl | 1474537 | n.880G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474539 | n.882C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474540 | n.883T>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474552 | n.895C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474558 | n.901G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474582 | n.925T>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474853 | n.1196A>G | non_coding_transcript_exon_variant | 0.55 |
rrl | 1474864 | n.1207C>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1474904 | n.1247G>C | non_coding_transcript_exon_variant | 0.57 |
rrl | 1474905 | n.1248T>C | non_coding_transcript_exon_variant | 0.57 |
rrl | 1474928 | n.1271C>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1475115 | n.1458A>G | non_coding_transcript_exon_variant | 0.5 |
rrl | 1475124 | n.1467A>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1475137 | n.1480A>T | non_coding_transcript_exon_variant | 0.57 |
rrl | 1475170 | n.1513A>G | non_coding_transcript_exon_variant | 0.67 |
rrl | 1475781 | n.2124T>C | non_coding_transcript_exon_variant | 0.33 |
rrl | 1475869 | n.2212C>A | non_coding_transcript_exon_variant | 0.2 |
rrl | 1475877 | n.2220C>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1475881 | n.2224T>C | non_coding_transcript_exon_variant | 0.17 |
rrl | 1475883 | n.2226A>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476130 | n.2473G>A | non_coding_transcript_exon_variant | 0.27 |
rrl | 1476131 | n.2474C>T | non_coding_transcript_exon_variant | 0.27 |
rrl | 1476141 | n.2484A>G | non_coding_transcript_exon_variant | 0.27 |
rrl | 1476153 | n.2496T>C | non_coding_transcript_exon_variant | 0.36 |
rrl | 1476164 | n.2507A>G | non_coding_transcript_exon_variant | 0.42 |
rrl | 1476165 | n.2508T>G | non_coding_transcript_exon_variant | 0.45 |
rrl | 1476194 | n.2537A>G | non_coding_transcript_exon_variant | 0.62 |
rrl | 1476200 | n.2543A>T | non_coding_transcript_exon_variant | 0.6 |
rrl | 1476201 | n.2544C>T | non_coding_transcript_exon_variant | 0.6 |
rrl | 1476204 | n.2547C>T | non_coding_transcript_exon_variant | 0.6 |
rrl | 1476215 | n.2558C>T | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476224 | n.2567A>G | non_coding_transcript_exon_variant | 0.57 |
rrl | 1476235 | n.2578A>G | non_coding_transcript_exon_variant | 0.6 |
rrl | 1476245 | n.2588C>T | non_coding_transcript_exon_variant | 0.6 |
rrl | 1476252 | n.2595T>G | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476256 | n.2599A>G | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476359 | n.2702C>G | non_coding_transcript_exon_variant | 0.88 |
rrl | 1476363 | n.2706A>G | non_coding_transcript_exon_variant | 0.91 |
rrl | 1476366 | n.2709A>C | non_coding_transcript_exon_variant | 0.91 |
rrl | 1476368 | n.2711T>C | non_coding_transcript_exon_variant | 0.91 |
rrl | 1476369 | n.2712C>T | non_coding_transcript_exon_variant | 0.91 |
rrl | 1476374 | n.2717T>G | non_coding_transcript_exon_variant | 0.92 |
rrl | 1476381 | n.2724G>C | non_coding_transcript_exon_variant | 0.95 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.82 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.79 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.45 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.35 |
rrl | 1476515 | n.2858C>T | non_coding_transcript_exon_variant | 0.26 |
rpsA | 1834024 | c.483G>C | synonymous_variant | 0.12 |
rpsA | 1834034 | p.Ile165Val | missense_variant | 0.11 |
rpsA | 1834039 | c.498C>T | synonymous_variant | 0.12 |
rpsA | 1834040 | p.Lys167Gln | missense_variant | 0.12 |
rpsA | 1834069 | c.528G>C | synonymous_variant | 0.17 |
rpsA | 1834090 | c.549G>T | synonymous_variant | 0.15 |
rpsA | 1834099 | c.558C>G | synonymous_variant | 0.13 |
rpsA | 1834105 | c.564C>T | synonymous_variant | 0.14 |
rpsA | 1834108 | c.567C>G | synonymous_variant | 0.12 |
rpsA | 1834114 | c.573G>C | synonymous_variant | 0.12 |
rpsA | 1834189 | c.648G>C | synonymous_variant | 0.1 |
rpsA | 1834210 | c.669C>T | synonymous_variant | 0.11 |
rpsA | 1834213 | c.672G>C | synonymous_variant | 0.11 |
rpsA | 1834219 | c.678C>T | synonymous_variant | 0.11 |
rpsA | 1834222 | c.681T>C | synonymous_variant | 0.11 |
rpsA | 1834225 | c.684C>G | synonymous_variant | 0.1 |
rpsA | 1834249 | c.708T>C | synonymous_variant | 0.1 |
rpsA | 1834261 | c.720A>G | synonymous_variant | 0.12 |
rpsA | 1834264 | c.723G>C | synonymous_variant | 0.13 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2168945 | c.1668T>C | synonymous_variant | 1.0 |
PPE35 | 2170568 | p.Ile15Met | missense_variant | 1.0 |
Rv1979c | 2222013 | c.1152C>G | synonymous_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
rpoA | 3878575 | c.-68C>T | upstream_gene_variant | 1.0 |
clpC1 | 4038318 | p.Pro796Leu | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embB | 4247243 | p.Gly244Arg | missense_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |