Run ID: ERR4816781
Sample name:
Date: 01-04-2023 14:37:39
Number of reads: 2830603
Percentage reads mapped: 99.37
Strain: lineage4.8
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.8 | Euro-American (mainly T) | T1;T2;T3;T5 | RD219 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472714 | n.869A>G | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472954 | n.1110delC | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472958 | n.1113_1114insC | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472973 | n.1128A>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472986 | n.1141_1142insA | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472989 | n.1145delA | non_coding_transcript_exon_variant | 0.43 |
rrs | 1473259 | n.1414C>T | non_coding_transcript_exon_variant | 0.25 |
rrs | 1473276 | n.1431A>G | non_coding_transcript_exon_variant | 0.25 |
rrs | 1473283 | n.1438T>C | non_coding_transcript_exon_variant | 0.29 |
rrs | 1473292 | n.1447G>T | non_coding_transcript_exon_variant | 0.27 |
rrs | 1473293 | n.1448G>T | non_coding_transcript_exon_variant | 0.18 |
rrs | 1473301 | n.1456T>C | non_coding_transcript_exon_variant | 0.18 |
rrl | 1473523 | n.-134delC | upstream_gene_variant | 0.11 |
rrl | 1474001 | n.344C>T | non_coding_transcript_exon_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2168149 | p.Pro822Ser | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
ald | 3086999 | c.180C>G | synonymous_variant | 1.0 |
Rv3083 | 3448497 | c.-7T>A | upstream_gene_variant | 1.0 |
clpC1 | 4039729 | p.Asp326Asn | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
ethA | 4327461 | p.Leu5Phe | missense_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
Rv3083 | 3448507 | c.5_*1408del | frameshift_variant&stop_lost&splice_region_variant | 1.0 |