Run ID: ERR4817293
Sample name:
Date: 01-04-2023 14:54:37
Number of reads: 7922507
Percentage reads mapped: 99.3
Strain: lineage4.1.2
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.1 | Euro-American | T;X;H | None | 1.0 |
lineage4.1.2 | Euro-American | T;H | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
mshA | 576108 | p.Ala254Gly | missense_variant | 0.21 |
rpoC | 765150 | p.Gly594Glu | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
embR | 1417140 | p.Ala70Ser | missense_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472155 | n.310C>T | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472160 | n.315C>T | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472194 | n.349G>C | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472225 | n.380C>A | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472251 | n.406G>A | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472259 | n.414C>A | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472530 | n.685G>A | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472537 | n.692C>T | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472544 | n.699C>A | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472545 | n.700A>T | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472557 | n.712G>A | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472566 | n.721G>A | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472570 | n.725G>A | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 0.35 |
rrs | 1472579 | n.734G>C | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472580 | n.735C>T | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 0.27 |
rrs | 1472598 | n.753A>C | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472599 | n.754G>T | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472612 | n.767G>T | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472824 | n.979T>A | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472827 | n.982G>T | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472828 | n.983T>C | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472895 | n.1050C>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1474181 | n.524C>A | non_coding_transcript_exon_variant | 0.2 |
rrl | 1474184 | n.527C>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1474197 | n.540C>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1474199 | n.542G>C | non_coding_transcript_exon_variant | 0.2 |
rrl | 1474200 | n.545delT | non_coding_transcript_exon_variant | 0.22 |
rrl | 1474249 | n.592G>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1475896 | n.2239A>G | non_coding_transcript_exon_variant | 0.25 |
rrl | 1475898 | n.2241A>G | non_coding_transcript_exon_variant | 0.25 |
rrl | 1475899 | n.2242G>A | non_coding_transcript_exon_variant | 0.22 |
rrl | 1476359 | n.2702C>G | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476381 | n.2724G>C | non_coding_transcript_exon_variant | 0.18 |
fabG1 | 1673249 | c.-191C>T | upstream_gene_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
folC | 2747022 | p.Val193Ile | missense_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
Rv3083 | 3448894 | p.Tyr131Asp | missense_variant | 1.0 |
Rv3083 | 3449642 | p.Asn380Ser | missense_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fbiA | 3641164 | p.Ile208Val | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242803 | p.Val981Leu | missense_variant | 1.0 |
aftB | 4268861 | c.-25T>C | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |