Rv3805c - c.-25T>C

Note: the variant has been searched for in a non-representative convenience dataset of samples from the ENA. This sampleset may contain overrepresentation in certain categories such as geographic source, drug resistance type and lineage. Interpretation of variant frequencies should be performed cautiously with this in mind.
Drug resistance types
215 Sensitive 16 RR-TB 33 HR-TB 44 MDR-TB 5 Pre-XDR-TB 0 XDR-TB 7 Other
lineage Counts
lineage Count
lineage4.1.2 302
lineage1.2.2.2 1
lineage3;lineage4.1.2;lineage4.6.1.2 1
lineage2.2.1.1;lineage4.1.2 1
lineage1.2.2.2;lineage4.1.2 1
lineage4.8 1
lineage2.2.1;lineage4.1.2;lineage4.8 2
lineage3;lineage4.1.2 1
lineage4.4.2 1
lineage4.1.1;lineage4.1.2 1
lineage2.2.1 3
lineage1.1.3.2;lineage4.1.2 1
lineage4.1.2;lineage4.3.4.2.1 2
lineage1.1.1 1
lineage2.2;lineage4.1.2 1
spoligotype Counts
spoligotype Count
None 320
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
ERR11252634 Sensitive lineage4.1.2 None
ERR4808860 Sensitive lineage4.1.2 za
SRR6855900 Sensitive lineage4.1.2 None
ERR11252640 Sensitive lineage4.1.2 None
ERR4808912 Sensitive lineage4.1.2 za
SRR22250130 Sensitive lineage1.2.2.2 None
ERR11252730 Sensitive lineage4.1.2 None
ERR4809115 Sensitive lineage4.1.2 za
ERR11252671 Sensitive lineage4.1.2 None
ERR270703 HR-TB lineage4.1.2 None
ERR270801 HR-TB lineage4.1.2 None
ERR8699106 Sensitive lineage4.1.2 None
ERR1023466 Sensitive lineage4.1.2 None
ERR8975870 Sensitive lineage4.1.2 None
ERR9992682 RR-TB lineage4.1.2 None
ERR8975937 Sensitive lineage4.1.2 None
ERR11489057 MDR-TB lineage4.1.2 None
ERR8976104 Sensitive lineage4.1.2 None
SRR2100877 HR-TB lineage4.1.2 None
SRR2100898 HR-TB lineage4.1.2 None
SRR2100905 HR-TB lineage4.1.2 None
SRR2101333 Sensitive lineage4.1.2 None
SRR2100894 HR-TB lineage4.1.2 None
ERR4816461 Sensitive lineage4.1.2 gb
ERR4818758 Sensitive lineage4.1.2 gb
ERR4818853 Sensitive lineage4.1.2 gb
ERR4819812 Sensitive lineage4.1.2 gb
ERR2515364 Sensitive lineage4.1.2 za
ERR2515580 Sensitive lineage4.1.2 za
ERR2515697 Sensitive lineage4.1.2 za
SRR6856047 Sensitive lineage4.1.2 None
ERR161095 Sensitive lineage4.1.2 mw
ERR11252566 Sensitive lineage4.1.2 None
ERR176660 Sensitive lineage4.1.2 mw
ERR176719 Sensitive lineage4.1.2 mw
ERR779670 Sensitive lineage4.1.2 None
ERR176815 Sensitive lineage4.1.2 mw
SRR22251427 Sensitive lineage4.1.2 None
ERR181684 Sensitive lineage4.1.2 mw
ERR181785 Sensitive lineage3;lineage4.1.2;lineage4.6.1.2 mw
ERR181796 Sensitive lineage4.1.2 mw
ERR181803 Sensitive lineage4.1.2 mw
ERR181818 Sensitive lineage4.1.2 mw
ERR181834 Sensitive lineage4.1.2 mw
ERR181838 Sensitive lineage4.1.2 mw
ERR181859 Sensitive lineage4.1.2 mw
ERR181899 Sensitive lineage4.1.2 mw
ERR279523 Sensitive lineage4.1.2 None
ERR11775621 Sensitive lineage4.1.2 None
ERR13260446 Sensitive lineage2.2.1.1;lineage4.1.2 None
ERR161054 Sensitive lineage4.1.2 mw
ERR182014 Sensitive lineage4.1.2 mw
ERR212074 Sensitive lineage4.1.2 mw
ERR212169 Sensitive lineage4.1.2 mw
ERR400486 Sensitive lineage4.1.2 None
ERR323100 Sensitive lineage4.1.2 mw
SRR2101590 Sensitive lineage4.1.2 None
ERR773809 Sensitive lineage4.1.2 None
ERR10748355 RR-TB lineage4.1.2 None
ERR970455 RR-TB lineage4.1.2 None
ERR11489011 MDR-TB lineage4.1.2 None
SRR6855905 Other lineage4.1.2 None
ERR773788 Sensitive lineage4.1.2 None
ERR11466248 Sensitive lineage4.1.2 None
SRR1183074 Sensitive lineage4.1.2 None
ERR11489016 MDR-TB lineage4.1.2 None
ERR11488495 MDR-TB lineage4.1.2 None
ERR11466034 Sensitive lineage4.1.2 None
SRR6896402 Sensitive lineage4.1.2 None
SRR6856064 Sensitive lineage4.1.2 None
SRR10869314 Sensitive lineage4.1.2 None
SAMN02053817 Sensitive lineage4.1.2 None
ERR7821230 HR-TB lineage4.1.2 None
ERR13260754 Sensitive lineage4.1.2 None
ERR11488454 MDR-TB lineage4.1.2 None
SRR11342683 Other lineage4.1.2 None
ERR2515847 Sensitive lineage4.1.2 za
ERR4797059 Pre-XDR-TB lineage4.1.2 in
ERR11465355 Sensitive lineage4.1.2 None
ERR2515596 Sensitive lineage4.1.2 None
ERR11488485 MDR-TB lineage4.1.2 None
ERR2515775 Sensitive lineage4.1.2 za
ERR2516067 RR-TB lineage1.2.2.2;lineage4.1.2 za
ERR4815266 Sensitive lineage4.1.2 None
SRR10315574 Sensitive lineage4.1.2 None
ERR11488627 MDR-TB lineage4.1.2 None
ERR3639728 MDR-TB lineage4.1.2 None
ERR11465069 Sensitive lineage4.1.2 None
ERR9119701 MDR-TB lineage4.1.2 None
ERR117638 RR-TB lineage4.1.2 None
ERR11488659 MDR-TB lineage4.1.2 None
ERR11067567 Sensitive lineage4.1.2 None
ERR13260472 Sensitive lineage4.1.2 None
ERR11488815 MDR-TB lineage4.1.2 None
ERR473336 Sensitive lineage4.1.2 None
ERR736812 Sensitive lineage4.1.2 None
SRR6855989 Sensitive lineage4.1.2 None
ERR4816037 Sensitive lineage4.1.2 None
ERR2503536 Sensitive lineage4.8 fi
ERR13289993 Sensitive lineage4.1.2 None
ERR221583 Sensitive lineage4.1.2 None
SRR6855994 Sensitive lineage4.1.2 None
SRR1180394 Sensitive lineage2.2.1;lineage4.1.2;lineage4.8 None
ERR11465178 Sensitive lineage4.1.2 None
SRR29055957 MDR-TB lineage3;lineage4.1.2 None
ERR473324 Sensitive lineage4.1.2 None
SRR15315823 MDR-TB lineage4.4.2 None
ERR11466392 Sensitive lineage4.1.1;lineage4.1.2 None
SRR1180212 Sensitive lineage4.1.2 None
ERR11465345 Sensitive lineage4.1.2 None
ERR11465186 Sensitive lineage4.1.2 None
ERR4818081 Sensitive lineage4.1.2 None
SRR21277696 Other lineage2.2.1 None
ERR9806860 RR-TB lineage4.1.2 None
ERR279631 HR-TB lineage4.1.2 None
SRR10315572 Sensitive lineage4.1.2 None
ERR4816426 Sensitive lineage4.1.2 None
ERR11465121 Sensitive lineage4.1.2 None
ERR4814668 Sensitive lineage4.1.2 None
ERR386876 HR-TB lineage4.1.2 None
SRR6855967 Sensitive lineage4.1.2 None
ERR970453 RR-TB lineage4.1.2 None
ERR270796 HR-TB lineage4.1.2 None
SRR6982329 Sensitive lineage4.1.2 None
SRR22251141 Sensitive lineage4.1.2 None
ERR270795 HR-TB lineage4.1.2 None
SRR15368812 Sensitive lineage2.2.1 None
ERR4819405 Sensitive lineage4.1.2 None
SRR924703 Sensitive lineage4.1.2 None
SRR3725675 Sensitive lineage4.1.2 None
SAMN02336788 Pre-XDR-TB lineage4.1.2 za
ERR11252544 Sensitive lineage4.1.2 None
ERR11488732 MDR-TB lineage4.1.2 None
ERR4830474 RR-TB lineage4.1.2 None
ERR4830512 Sensitive lineage4.1.2 za
ERR1023424 Sensitive lineage4.1.2 None
ERR7911751 Sensitive lineage4.1.2 za
ERR7911762 Sensitive lineage4.1.2 za
SRR6982150 Sensitive lineage4.1.2 None
ERR11775545 Sensitive lineage4.1.2 None
ERR495054 Sensitive lineage4.1.2 None
SRR2099975 HR-TB lineage4.1.2 None
SRR2100032 HR-TB lineage4.1.2 None
SRR2100054 Sensitive lineage4.1.2 None
SRR2100179 HR-TB lineage4.1.2 None
ERR2515762 Sensitive lineage4.1.2 za
ERR2515145 Sensitive lineage4.1.2 za
ERR2515817 Sensitive lineage4.1.2 za
ERR2515489 Sensitive lineage4.1.2 za
ERR2515180 Sensitive lineage4.1.2 za
ERR2515501 Sensitive lineage4.1.2 za
ERR161109 Sensitive lineage4.1.2 mw
SRR9971239 MDR-TB lineage4.1.2 None
ERR221592 Sensitive lineage4.1.2 mw
ERR176626 Sensitive lineage4.1.2 mw
ERR182026 Sensitive lineage1.1.3.2;lineage4.1.2 mw
ERR182027 Sensitive lineage4.1.2;lineage4.3.4.2.1 mw
ERR182031 Sensitive lineage4.1.2 mw
ERR182043 Sensitive lineage4.1.2 mw
SRR6856034 Sensitive lineage4.1.2 None
ERR212128 Sensitive lineage4.1.2 mw
SAMN02585900 Sensitive lineage4.1.2 za
ERR161028 Sensitive lineage4.1.2 mw
ERR11488806 MDR-TB lineage4.1.2 None
SRR22251574 Sensitive lineage4.1.2 None
ERR221619 Sensitive lineage4.1.2 mw
ERR323059 Sensitive lineage4.1.2 mw
SRR1180361 Sensitive lineage2.2.1;lineage4.1.2;lineage4.8 None
ERR4818997 Sensitive lineage4.1.2 None
ERR11466456 Sensitive lineage4.1.2 None
ERR270681 HR-TB lineage4.1.2 None
ERR11488393 MDR-TB lineage4.1.2 None
SRR18213678 HR-TB lineage4.1.2 None
ERR5987460 Sensitive lineage4.1.2 None
ERR11775572 Sensitive lineage4.1.2 None
ERR2515671 Sensitive lineage4.1.2 None
SRR5535788 Sensitive lineage4.1.2 None
ERR161058 Sensitive lineage4.1.2 mw
ERR11082758 MDR-TB lineage4.1.2 None
ERR495149 RR-TB lineage4.1.2 None
ERR779668 Sensitive lineage4.1.2 None
ERR8686164 Sensitive lineage4.1.2 None
SRR9970986 Sensitive lineage4.1.2 None
ERR11489033 MDR-TB lineage4.1.2 None
SRR1165297 MDR-TB lineage4.1.2 None
ERR036200 Sensitive lineage4.1.2 None
ERR970454 RR-TB lineage4.1.2 None
ERR270777 HR-TB lineage4.1.2 None
ERR279618 RR-TB lineage4.1.2 None
ERR278517 HR-TB lineage4.1.2 None
SRR6981994 Sensitive lineage4.1.2 None
ERR11465040 Sensitive lineage4.1.2 None
SRR958216 Sensitive lineage4.1.2 None
ERR11465324 Sensitive lineage4.1.2 None
SRR28351291 MDR-TB lineage4.1.2 None
SRR2101756 Sensitive lineage4.1.2 None
SRR1181395 Sensitive lineage4.1.2 None
ERR2515533 Sensitive lineage4.1.2 None
ERR270684 HR-TB lineage4.1.2 None
ERR11488433 MDR-TB lineage4.1.2 None
SRR21279452 Other lineage2.2.1 None
ERR9119706 Sensitive lineage4.1.2 None
SRR6855897 Sensitive lineage4.1.2 None
SRR29093821 Sensitive lineage4.1.2 None
ERR126612 Sensitive lineage4.1.2 mw
ERR163937 Sensitive lineage4.1.2 mw
ERR11488576 MDR-TB lineage4.1.2 None
ERR11488943 Pre-XDR-TB lineage4.1.2 None
ERR11465128 Sensitive lineage4.1.2 None
ERR163996 Sensitive lineage4.1.2 mw
ERR11488446 MDR-TB lineage4.1.2 None
ERR163986 Sensitive lineage4.1.2 mw
ERR171136 Sensitive lineage4.1.2 za
ERR181731 Sensitive lineage4.1.2 mw
ERR181757 Sensitive lineage4.1.2 mw
SRR29096391 Sensitive lineage4.1.2 None
ERR495194 Sensitive lineage4.1.2 None
ERR11488817 MDR-TB lineage4.1.2 None
ERR473295 HR-TB lineage4.1.2 None
SRR10315573 Sensitive lineage4.1.2 None
SRR29056074 Sensitive lineage4.1.2 None
SRR18213964 HR-TB lineage4.1.2 None
ERR13260870 HR-TB lineage4.1.2 None
ERR3039924 Sensitive lineage4.1.2 None
ERR11466437 Sensitive lineage4.1.2 None
ERR4817293 Sensitive lineage4.1.2 None
SAMN02403637 MDR-TB lineage4.1.2 za
SRR1181315 Sensitive lineage4.1.2 None
ERR11252638 HR-TB lineage4.1.2 None
SRR1062866 Pre-XDR-TB lineage4.1.2 None
ERR7911462 Sensitive lineage4.1.2 za
ERR473360 Sensitive lineage4.1.2 None
ERR8699128 Sensitive lineage4.1.2 None
ERR8699219 Sensitive lineage4.1.2 None
ERR1023440 Sensitive lineage4.1.2 None
ERR1023511 Sensitive lineage4.1.2 None
ERR216972 Sensitive lineage4.1.2 None
ERR8975129 Sensitive lineage4.1.2 None
ERR11465735 Sensitive lineage4.1.2 None
ERR11465149 Sensitive lineage4.1.2 None
ERR11488448 HR-TB lineage4.1.2 None
SRR6856076 Sensitive lineage4.1.2 None
SRR2100206 RR-TB lineage4.1.2 None
SRR2100705 HR-TB lineage4.1.2 None
SRR2101793 Sensitive lineage4.1.2 None
ERR2516756 MDR-TB lineage4.1.2 gb
SRR6045093 Sensitive lineage4.1.2 gb
ERR2199887 Sensitive lineage4.1.2 de
ERR2199936 Sensitive lineage4.1.2 sz
ERR2199996 Sensitive lineage4.1.2 sz
ERR2199992 Sensitive lineage4.1.2 sz
ERR550657 HR-TB lineage4.1.2 sz
ERR037544 Sensitive lineage4.1.2 mw
ERR245786 Sensitive lineage4.1.2 mw
ERR2027256 Other lineage4.1.2 None
ERR216968 Sensitive lineage4.1.2 mw
SRR11662127 MDR-TB lineage1.1.1 None
SRR3725710 Sensitive lineage4.1.2 None
SRR9970984 Sensitive lineage4.1.2 None
SRR29056160 Sensitive lineage4.1.2 None
ERR11488839 MDR-TB lineage4.1.2 None
SRR9971063 RR-TB lineage4.1.2 None
ERR4819447 Sensitive lineage4.1.2 None
SRR22250037 Sensitive lineage4.1.2 None
SRR1167303 MDR-TB lineage4.1.2 None
ERR270705 HR-TB lineage4.1.2 None
SRR9971319 MDR-TB lineage4.1.2 None
ERR10610196 RR-TB lineage4.1.2 None
ERR11465480 Sensitive lineage4.1.2 None
ERR5987278 MDR-TB lineage4.1.2 None
ERR11488520 MDR-TB lineage4.1.2 None
ERR11488736 MDR-TB lineage4.1.2 None
ERR11488682 MDR-TB lineage4.1.2 None
ERR2660483 Sensitive lineage4.1.2 None
ERR123942 HR-TB lineage4.1.2 None
ERR473344 Sensitive lineage4.1.2 None
SRR6982249 Sensitive lineage4.1.2 None
SRR29055692 MDR-TB lineage4.1.2 None
ERR11466493 Sensitive lineage4.1.2 None
ERR1633934 HR-TB lineage4.1.2 za
ERR1633920 RR-TB lineage4.1.2 za
ERR8975130 Sensitive lineage4.1.2 None
ERR245740 Sensitive lineage4.1.2 None
SRR6855888 Sensitive lineage4.1.2 None
SRR29055945 MDR-TB lineage4.1.2 None
SRR1173542 MDR-TB lineage4.1.2 None
ERR11465605 Sensitive lineage4.1.2 None
ERR323082 HR-TB lineage4.1.2;lineage4.3.4.2.1 None
ERR11488397 MDR-TB lineage4.1.2 None
ERR4815451 Sensitive lineage4.1.2 None
ERR473337 Other lineage4.1.2 None
ERR11465521 Sensitive lineage4.1.2 None
ERR1633826 Sensitive lineage4.1.2 None
SRR1013529 Pre-XDR-TB lineage4.1.2 None
SRR6982305 Sensitive lineage4.1.2 None
ERR11488860 MDR-TB lineage4.1.2 None
ERR11466048 Sensitive lineage4.1.2 None
SRR6896395 Sensitive lineage4.1.2 None
ERR11252496 Sensitive lineage4.1.2 None
SRR6855875 Sensitive lineage4.1.2 None
SRR11342682 Other lineage4.1.2 None
ERR495162 HR-TB lineage4.1.2 None
ERR11488794 MDR-TB lineage4.1.2 None
ERR7821098 Sensitive lineage4.1.2 None
SRR6982046 Sensitive lineage4.1.2 None
ERR779673 Sensitive lineage4.1.2 None
SRR1173820 MDR-TB lineage4.1.2 None
SRR10315575 Sensitive lineage4.1.2 None
ERR11466524 Sensitive lineage4.1.2 None
ERR11488622 MDR-TB lineage4.1.2 None
SRR10315647 RR-TB lineage4.1.2 None
SRR11349143 Sensitive lineage4.1.2 None
ERR230080 HR-TB lineage4.1.2 None
ERR11252552 HR-TB lineage4.1.2 None
ERR13260738 Sensitive lineage4.1.2 None
ERR4809020 Sensitive lineage2.2;lineage4.1.2 za
SRR29055612 MDR-TB lineage4.1.2 None
SRR6896512 Sensitive lineage4.1.2 None
ERR11465261 Sensitive lineage4.1.2 None
ERR11465612 Sensitive lineage4.1.2 None