Run ID: ERR9119701
Sample name:
Date: 02-04-2023 10:03:01
Number of reads: 4921947
Percentage reads mapped: 99.3
Strain: lineage4.1.2
Drug-resistance: MDR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.1 | Euro-American | T;X;H | None | 1.0 |
lineage4.1.2 | Euro-American | T;H | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rpoB | 761155 | p.Ser450Leu | missense_variant | 1.0 | rifampicin |
rrs | 1472359 | n.514A>C | non_coding_transcript_exon_variant | 1.0 | streptomycin |
fabG1 | 1673425 | c.-15C>T | upstream_gene_variant | 1.0 | isoniazid, ethionamide |
inhA | 1674782 | p.Ile194Thr | missense_variant | 1.0 | isoniazid, ethionamide |
pncA | 2289016 | p.Thr76Pro | missense_variant | 1.0 | pyrazinamide |
embB | 4248003 | p.Gln497Arg | missense_variant | 0.99 | ethambutol |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
rpoC | 765150 | p.Gly594Glu | missense_variant | 0.99 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
embR | 1417140 | p.Ala70Ser | missense_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1474425 | n.768A>G | non_coding_transcript_exon_variant | 0.19 |
rrl | 1474428 | n.771C>T | non_coding_transcript_exon_variant | 0.18 |
fabG1 | 1673249 | c.-191C>T | upstream_gene_variant | 0.98 |
rpsA | 1834744 | p.Asn401Lys | missense_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
folC | 2747022 | p.Val193Ile | missense_variant | 0.98 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
Rv3083 | 3448894 | p.Tyr131Asp | missense_variant | 1.0 |
Rv3083 | 3449642 | p.Asn380Ser | missense_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fbiA | 3641164 | p.Ile208Val | missense_variant | 0.99 |
rpoA | 3877967 | p.Thr181Ala | missense_variant | 0.95 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 0.99 |
embC | 4242803 | p.Val981Leu | missense_variant | 1.0 |
aftB | 4268861 | c.-25T>C | upstream_gene_variant | 1.0 |
ubiA | 4269308 | p.Phe176Leu | missense_variant | 0.98 |
whiB6 | 4338552 | c.-31A>T | upstream_gene_variant | 1.0 |