Run ID: ERR4817402
Sample name:
Date: 01-04-2023 14:58:50
Number of reads: 5103368
Percentage reads mapped: 99.1
Strain: lineage4.8
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.8 | Euro-American (mainly T) | T1;T2;T3;T5 | RD219 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rrs | 1472733 | n.888G>A | non_coding_transcript_exon_variant | 0.75 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472498 | n.653C>A | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472507 | n.662C>G | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472517 | n.672T>A | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472518 | n.673G>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472530 | n.685G>A | non_coding_transcript_exon_variant | 0.71 |
rrs | 1472537 | n.692C>T | non_coding_transcript_exon_variant | 0.62 |
rrs | 1472544 | n.699C>A | non_coding_transcript_exon_variant | 0.7 |
rrs | 1472545 | n.700A>T | non_coding_transcript_exon_variant | 0.7 |
rrs | 1472566 | n.721G>A | non_coding_transcript_exon_variant | 0.7 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 0.7 |
rrs | 1472579 | n.734G>T | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472598 | n.753A>C | non_coding_transcript_exon_variant | 0.62 |
rrs | 1472599 | n.754G>T | non_coding_transcript_exon_variant | 0.62 |
rrs | 1472697 | n.852T>C | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.6 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 0.54 |
rrs | 1472803 | n.958T>A | non_coding_transcript_exon_variant | 0.4 |
rrs | 1473055 | n.1210C>T | non_coding_transcript_exon_variant | 0.17 |
rrs | 1473056 | n.1211A>T | non_coding_transcript_exon_variant | 0.18 |
rrs | 1473066 | n.1221A>G | non_coding_transcript_exon_variant | 0.18 |
rrs | 1473145 | n.1300C>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1474001 | n.344C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.15 |
fabG1 | 1673162 | c.-278T>C | upstream_gene_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
Rv3083 | 3448497 | c.-7T>A | upstream_gene_variant | 1.0 |
Rv3236c | 3612047 | p.Ala357Val | missense_variant | 1.0 |
clpC1 | 4040300 | c.405C>A | synonymous_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embB | 4246820 | p.Pro103Thr | missense_variant | 1.0 |
ethA | 4326505 | c.969C>G | synonymous_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
Rv3083 | 3448507 | c.5_*1408del | frameshift_variant&stop_lost&splice_region_variant | 1.0 |