Run ID: ERR4819172
Sample name:
Date: 01-04-2023 15:57:44
Number of reads: 1269265
Percentage reads mapped: 98.66
Strain: lineage4.1.2.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.1 | Euro-American | T;X;H | None | 1.0 |
lineage4.1.2 | Euro-American | T;H | None | 1.0 |
lineage4.1.2.1 | Euro-American (Haarlem) | T1;H1 | RD182 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491591 | p.Lys270Met | missense_variant | 1.0 |
mshA | 575679 | p.Asn111Ser | missense_variant | 1.0 |
ccsA | 619696 | c.-195C>A | upstream_gene_variant | 0.13 |
rpoB | 760115 | c.309C>T | synonymous_variant | 1.0 |
rpoB | 762511 | p.Ala902Asp | missense_variant | 0.13 |
rpoC | 765150 | p.Gly594Glu | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472755 | n.910G>A | non_coding_transcript_exon_variant | 0.2 |
rrl | 1473965 | n.308G>C | non_coding_transcript_exon_variant | 0.25 |
rpsA | 1833354 | c.-188G>A | upstream_gene_variant | 0.13 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2167792 | p.Ser941Ala | missense_variant | 0.93 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518076 | c.-39C>T | upstream_gene_variant | 1.0 |
eis | 2715018 | p.His105Gln | missense_variant | 0.22 |
ahpC | 2725992 | c.-201G>C | upstream_gene_variant | 1.0 |
Rv2752c | 3064643 | p.Ser517Pro | missense_variant | 0.11 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
Rv3236c | 3612174 | p.Arg315Gly | missense_variant | 0.12 |
fbiA | 3640366 | c.-177G>A | upstream_gene_variant | 1.0 |
rpoA | 3878560 | c.-53C>G | upstream_gene_variant | 0.33 |
clpC1 | 4040871 | c.-167G>A | upstream_gene_variant | 0.12 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242803 | p.Val981Leu | missense_variant | 1.0 |
embA | 4244008 | p.Ala259Val | missense_variant | 0.18 |
embA | 4246171 | p.Asp980Gly | missense_variant | 0.1 |
ethR | 4327996 | p.Ala150Pro | missense_variant | 0.2 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |