Run ID: ERR4820046
Sample name:
Date: 01-04-2023 16:27:13
Number of reads: 1825855
Percentage reads mapped: 99.2
Strain: lineage4.1.2.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.1 | Euro-American | T;X;H | None | 1.0 |
lineage4.1.2 | Euro-American | T;H | None | 1.0 |
lineage4.1.2.1 | Euro-American (Haarlem) | T1;H1 | RD182 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 5128 | c.-111delA | upstream_gene_variant | 1.0 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 7907 | p.Phe202Leu | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491591 | p.Lys270Met | missense_variant | 1.0 |
mshA | 575679 | p.Asn111Ser | missense_variant | 1.0 |
mshA | 576108 | p.Ala254Gly | missense_variant | 0.2 |
rpoB | 760115 | c.309C>T | synonymous_variant | 1.0 |
rpoC | 765150 | p.Gly594Glu | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1304842 | c.1913delT | frameshift_variant | 0.4 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472251 | n.406G>A | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472258 | n.413A>G | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472259 | n.414C>A | non_coding_transcript_exon_variant | 0.17 |
rrs | 1473216 | n.1371C>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476200 | n.2543A>G | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476359 | n.2702C>G | non_coding_transcript_exon_variant | 0.36 |
rrl | 1476363 | n.2706A>G | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476366 | n.2709A>C | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476368 | n.2711T>C | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476369 | n.2712C>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476374 | n.2717T>G | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476381 | n.2724G>C | non_coding_transcript_exon_variant | 0.36 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.31 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.12 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2169063 | p.Met517Thr | missense_variant | 0.13 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518076 | c.-39C>T | upstream_gene_variant | 1.0 |
Rv2752c | 3065207 | p.Thr329Pro | missense_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242803 | p.Val981Leu | missense_variant | 1.0 |
aftB | 4268619 | p.Val73Gly | missense_variant | 0.3 |
ethR | 4326613 | c.-936G>A | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |