Run ID: ERR4820350
Sample name:
Date: 01-04-2023 16:38:01
Number of reads: 1934845
Percentage reads mapped: 99.1
Strain: lineage4.8
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.8 | Euro-American (mainly T) | T1;T2;T3;T5 | RD219 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rrs | 1472733 | n.888G>A | non_coding_transcript_exon_variant | 0.57 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 8933 | c.1632G>A | synonymous_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1303747 | p.Thr273Ala | missense_variant | 1.0 |
atpE | 1461087 | c.43C>T | synonymous_variant | 0.1 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472108 | n.263C>T | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472122 | n.277G>T | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472123 | n.278A>T | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472124 | n.279C>T | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.27 |
rrs | 1472155 | n.310C>T | non_coding_transcript_exon_variant | 0.31 |
rrs | 1472160 | n.315C>T | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472225 | n.380C>A | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.57 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.57 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 0.44 |
rrs | 1472803 | n.958T>A | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472824 | n.979T>A | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472895 | n.1050C>T | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472954 | n.1109T>C | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472956 | n.1111T>C | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472957 | n.1112C>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1473145 | n.1300C>T | non_coding_transcript_exon_variant | 0.25 |
rrs | 1473166 | n.1321G>A | non_coding_transcript_exon_variant | 0.21 |
rrs | 1473172 | n.1327T>G | non_coding_transcript_exon_variant | 0.31 |
rrs | 1473173 | n.1328C>T | non_coding_transcript_exon_variant | 0.23 |
rrs | 1473192 | n.1347A>G | non_coding_transcript_exon_variant | 0.13 |
rrs | 1473205 | n.1360T>C | non_coding_transcript_exon_variant | 0.13 |
rrs | 1473221 | n.1376C>T | non_coding_transcript_exon_variant | 0.25 |
rrl | 1474181 | n.524C>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474184 | n.527C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474197 | n.540C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474199 | n.542G>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474200 | n.545delT | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474249 | n.592G>T | non_coding_transcript_exon_variant | 0.8 |
rrl | 1476359 | n.2702C>G | non_coding_transcript_exon_variant | 0.86 |
rrl | 1476381 | n.2724G>C | non_coding_transcript_exon_variant | 0.86 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476429 | n.2772A>T | non_coding_transcript_exon_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
Rv3083 | 3448507 | c.5_*1408del | frameshift_variant&stop_lost&splice_region_variant | 1.0 |