Run ID: ERR4820730
Sample name:
Date: 01-04-2023 16:50:48
Number of reads: 2682875
Percentage reads mapped: 99.25
Strain: lineage4.8
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.8 | Euro-American (mainly T) | T1;T2;T3;T5 | RD219 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
atpE | 1460883 | c.-162G>T | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472507 | n.662C>G | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472517 | n.672T>A | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472518 | n.673G>T | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472530 | n.685G>A | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472537 | n.692C>T | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472544 | n.699C>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472545 | n.700A>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472566 | n.721G>A | non_coding_transcript_exon_variant | 0.83 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 0.83 |
rrs | 1472579 | n.734G>C | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472579 | n.734G>T | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472580 | n.735C>T | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 0.83 |
rrs | 1472598 | n.753A>C | non_coding_transcript_exon_variant | 0.8 |
rrs | 1472599 | n.754G>T | non_coding_transcript_exon_variant | 0.8 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472803 | n.958T>A | non_coding_transcript_exon_variant | 0.25 |
rrs | 1473109 | n.1264T>C | non_coding_transcript_exon_variant | 0.22 |
rrl | 1476771 | n.3114G>A | non_coding_transcript_exon_variant | 0.12 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 0.99 |
PPE35 | 2168149 | p.Pro822Ser | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
Rv3083 | 3448497 | c.-7T>A | upstream_gene_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
aftB | 4268601 | p.Leu79Pro | missense_variant | 0.96 |
ethR | 4327660 | p.Glu38Lys | missense_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
Rv3083 | 3448507 | c.5_*1408del | frameshift_variant&stop_lost&splice_region_variant | 1.0 |