Run ID: ERR4821077
Sample name:
Date: 01-04-2023 17:02:57
Number of reads: 1033617
Percentage reads mapped: 99.61
Strain: lineage4.1.2.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.1 | Euro-American | T;X;H | None | 1.0 |
lineage4.1.2 | Euro-American | T;H | None | 1.0 |
lineage4.1.2.1 | Euro-American (Haarlem) | T1;H1 | RD182 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 7158 | c.1931_1933delCCG | disruptive_inframe_deletion | 0.17 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491591 | p.Lys270Met | missense_variant | 1.0 |
mshA | 575679 | p.Asn111Ser | missense_variant | 1.0 |
mshA | 576352 | c.1005T>C | synonymous_variant | 0.1 |
rpoB | 760115 | c.309C>T | synonymous_variant | 1.0 |
rpoC | 765150 | p.Gly594Glu | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1474217 | n.560A>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476025 | n.2368G>C | non_coding_transcript_exon_variant | 0.4 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2168958 | p.Ala552Val | missense_variant | 0.12 |
PPE35 | 2169734 | c.879C>T | synonymous_variant | 0.11 |
PPE35 | 2170504 | p.Glu37Lys | missense_variant | 0.1 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518076 | c.-39C>T | upstream_gene_variant | 1.0 |
kasA | 2518606 | c.492G>C | synonymous_variant | 0.11 |
kasA | 2518609 | p.Met165Ile | missense_variant | 0.11 |
ahpC | 2726338 | p.Val49Gly | missense_variant | 0.29 |
Rv2752c | 3065710 | p.Gly161Asp | missense_variant | 0.11 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
Rv3083 | 3448767 | c.264C>T | synonymous_variant | 0.13 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fbiA | 3640510 | c.-33G>A | upstream_gene_variant | 0.13 |
alr | 3841584 | c.-164C>G | upstream_gene_variant | 1.0 |
embA | 4242506 | c.-727C>T | upstream_gene_variant | 0.12 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242803 | p.Val981Leu | missense_variant | 1.0 |
embA | 4244295 | p.Ala355Thr | missense_variant | 0.11 |
aftB | 4268611 | p.Pro76Ser | missense_variant | 0.17 |
ethR | 4328014 | p.Glu156* | stop_gained | 0.11 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |