Run ID: ERR4821551
Sample name:
Date: 01-04-2023 17:18:59
Number of reads: 9513
Percentage reads mapped: 0.5
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
rpoC | 765478 | c.2109T>C | synonymous_variant | 1.0 |
rpoC | 765499 | c.2130C>G | synonymous_variant | 1.0 |
rpoC | 765529 | c.2160C>T | synonymous_variant | 1.0 |
rrs | 1472094 | n.249T>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472106 | n.261G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472108 | n.263C>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472127 | n.282C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472129 | n.284G>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472137 | n.292G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472203 | n.358G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472530 | n.685G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472537 | n.692C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472541 | n.696T>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472544 | n.699C>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472545 | n.700A>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472557 | n.712G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472570 | n.725G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472573 | n.728C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472579 | n.734G>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472598 | n.753A>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472655 | n.810G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472658 | n.813G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472659 | n.814G>A | non_coding_transcript_exon_variant | 0.95 |
rrs | 1472661 | n.816A>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472669 | n.824_825insCAG | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472677 | n.832C>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472678 | n.833T>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472679 | n.834_835insAC | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472684 | n.841_846delGATCCG | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472697 | n.852T>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472700 | n.855C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472705 | n.860G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472715 | n.870C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472734 | n.889C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472741 | n.896G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472767 | n.922G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472779 | n.934G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472786 | n.941C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 0.88 |
rrs | 1472803 | n.958T>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472824 | n.979T>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472895 | n.1050C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473005 | n.1160C>T | non_coding_transcript_exon_variant | 0.67 |
rrs | 1473026 | n.1181T>C | non_coding_transcript_exon_variant | 0.67 |
rrl | 1475115 | n.1458A>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475122 | n.1465C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475129 | n.1472G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475154 | n.1497C>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475167 | n.1510T>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475175 | n.1518G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475182 | n.1525T>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475188 | n.1531C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475877 | n.2220C>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475878 | n.2221T>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475879 | n.2222T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475881 | n.2224T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475883 | n.2226A>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475884 | n.2227A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475897 | n.2240T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475900 | n.2243A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475902 | n.2245T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475906 | n.2249C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475916 | n.2259C>G | non_coding_transcript_exon_variant | 1.0 |