TB-Profiler result

Run: ERR4821793
Summary

Run ID: ERR4821793

Sample name:

Date: 01-04-2023 17:27:14

Number of reads: 2663185

Percentage reads mapped: 99.95

Strain: lineage4.9

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
mshA 576751 p.Lys468Asn missense_variant 0.24
fbiC 1304850 p.Asn640Lys missense_variant 0.18
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rpoA 3878627 c.-120T>G upstream_gene_variant 0.5
rpoA 3878641 c.-135delG upstream_gene_variant 0.15
rpoA 3878662 c.-156delA upstream_gene_variant 0.11