Run ID: ERR4821907
Sample name:
Date: 01-04-2023 17:31:14
Number of reads: 1966017
Percentage reads mapped: 98.99
Strain: lineage4.1.1.3
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.1 | Euro-American | T;X;H | None | 1.0 |
lineage4.1.1 | Euro-American (X-type) | X1;X2;X3 | None | 1.0 |
lineage4.1.1.3 | Euro-American (X-type) | X1;X3 | RD193 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 5059 | c.-181G>C | upstream_gene_variant | 1.0 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
rpoC | 765150 | p.Gly594Glu | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472544 | n.699C>A | non_coding_transcript_exon_variant | 0.1 |
rrs | 1472545 | n.700A>T | non_coding_transcript_exon_variant | 0.1 |
rrs | 1472566 | n.721G>A | non_coding_transcript_exon_variant | 0.1 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 0.1 |
rrs | 1472579 | n.734G>T | non_coding_transcript_exon_variant | 0.1 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472597 | n.752G>A | non_coding_transcript_exon_variant | 0.1 |
rrs | 1472598 | n.753A>C | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472599 | n.754G>T | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.1 |
rrs | 1472655 | n.810G>A | non_coding_transcript_exon_variant | 0.24 |
rrs | 1472658 | n.813G>A | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472661 | n.816A>G | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472670 | n.825G>T | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472673 | n.828T>G | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472675 | n.830T>C | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472677 | n.832C>T | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472681 | n.837_838delTT | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472690 | n.845C>A | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472697 | n.852T>C | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472714 | n.869A>G | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472753 | n.910G>A | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472895 | n.1050C>T | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472952 | n.1107T>C | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472955 | n.1110C>T | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472956 | n.1111T>C | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472957 | n.1112C>T | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472973 | n.1128A>T | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472987 | n.1142G>A | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472989 | n.1144G>A | non_coding_transcript_exon_variant | 0.39 |
rrs | 1472990 | n.1145A>G | non_coding_transcript_exon_variant | 0.39 |
rrs | 1473035 | n.1190G>A | non_coding_transcript_exon_variant | 0.38 |
rrs | 1473055 | n.1210C>T | non_coding_transcript_exon_variant | 0.21 |
rrs | 1473056 | n.1211A>T | non_coding_transcript_exon_variant | 0.21 |
rrs | 1473066 | n.1221A>G | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476337 | n.2680C>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476359 | n.2702C>G | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476381 | n.2724G>C | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.15 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
ahpC | 2726341 | p.Val50Gly | missense_variant | 0.23 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
embC | 4239685 | c.-178G>C | upstream_gene_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242803 | p.Val981Leu | missense_variant | 1.0 |
embB | 4249408 | c.2895G>A | synonymous_variant | 1.0 |
ethR | 4327691 | p.Asp48Gly | missense_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |