Run ID: ERR4827903
Sample name:
Date: 01-04-2023 18:30:38
Number of reads: 2248867
Percentage reads mapped: 99.38
Strain: lineage4.6.2
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.6 | Euro-American | T;LAM | None | 1.0 |
lineage4.6.2 | Euro-American | T;LAM | RD726 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 8736 | p.Val479Met | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpR5 | 778298 | c.-692C>T | upstream_gene_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1303609 | p.Gly227Arg | missense_variant | 1.0 |
fbiC | 1305417 | c.2487C>G | synonymous_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
fabG1 | 1673380 | c.-60C>G | upstream_gene_variant | 0.21 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2170048 | p.Leu189Val | missense_variant | 0.46 |
PPE35 | 2170053 | p.Thr187Ser | missense_variant | 0.45 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2519247 | p.Pro378Leu | missense_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3474745 | p.Gln247Lys | missense_variant | 1.0 |
rpoA | 3878654 | c.-147A>G | upstream_gene_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4242883 | c.-350C>T | upstream_gene_variant | 1.0 |
embB | 4246544 | p.Thr11Pro | missense_variant | 0.24 |
embB | 4246548 | p.Pro12Gln | missense_variant | 0.26 |
embB | 4246555 | c.42G>C | synonymous_variant | 0.3 |
embB | 4246556 | p.Ala15Pro | missense_variant | 0.3 |
embB | 4246563 | p.Leu17Trp | missense_variant | 0.22 |
embB | 4246567 | c.54G>T | synonymous_variant | 0.16 |
ethA | 4326326 | p.Thr383Lys | missense_variant | 1.0 |
whiB6 | 4338236 | p.Arg96* | stop_gained | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |