TB-Profiler result

Run: ERR4828958

Summary

Run ID: ERR4828958

Sample name:

Date: 01-04-2023 19:11:36

Number of reads: 920346

Percentage reads mapped: 99.75

Strain: lineage4.7

Drug-resistance: Sensitive


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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.7 Euro-American (mainly T) T1;T5 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 6091 c.852G>A synonymous_variant 0.15
gyrB 6095 p.Glu286Lys missense_variant 0.14
gyrA 7362 p.Glu21Gln missense_variant 1.0
fgd1 491535 c.753G>A synonymous_variant 0.12
rpoB 760412 c.606C>T synonymous_variant 1.0
rpoB 762079 p.Leu758Pro missense_variant 0.12
rpoC 765803 p.Thr812Ala missense_variant 0.1
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 776583 p.Gln633Arg missense_variant 0.11
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
Rv1258c 1406371 p.Val324Leu missense_variant 0.13
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1473170 n.1325A>G non_coding_transcript_exon_variant 0.15
rrl 1473657 n.-1T>C upstream_gene_variant 0.11
rrl 1473673 n.16G>A non_coding_transcript_exon_variant 0.11
rrl 1474294 n.637C>G non_coding_transcript_exon_variant 1.0
rrl 1474736 n.1084delG non_coding_transcript_exon_variant 0.12
fabG1 1674182 c.743G>C stop_lost&splice_region_variant 0.12
tlyA 1917972 c.33A>G synonymous_variant 1.0
ndh 2102485 c.558C>T synonymous_variant 0.12
PPE35 2168025 p.Ala863Gly missense_variant 0.13
PPE35 2169703 p.Asn304Asp missense_variant 0.22
PPE35 2169704 c.909A>C synonymous_variant 0.22
PPE35 2169707 p.Thr302Ser missense_variant 0.18
PPE35 2169717 p.Asn299Ile missense_variant 0.17
PPE35 2169725 c.888T>C synonymous_variant 0.18
PPE35 2170048 p.Leu189Val missense_variant 0.11
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
eis 2715158 p.Val59Ile missense_variant 1.0
folC 2746951 c.647delA frameshift_variant 0.12
pepQ 2860592 c.-174T>G upstream_gene_variant 0.17
whiB7 3568428 c.252A>G synonymous_variant 0.18
embC 4242609 p.Glu916Gly missense_variant 0.13
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embA 4246217 p.Glu995Asp missense_variant 0.11
embB 4248133 c.1620C>T synonymous_variant 0.11
embB 4249732 c.3219C>G synonymous_variant 1.0
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
gid 4408091 p.Pro38Ser missense_variant 1.0