Run ID: ERR4828958
Sample name:
Date: 01-04-2023 19:11:36
Number of reads: 920346
Percentage reads mapped: 99.75
Strain: lineage4.7
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.7 | Euro-American (mainly T) | T1;T5 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 6091 | c.852G>A | synonymous_variant | 0.15 |
gyrB | 6095 | p.Glu286Lys | missense_variant | 0.14 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
fgd1 | 491535 | c.753G>A | synonymous_variant | 0.12 |
rpoB | 760412 | c.606C>T | synonymous_variant | 1.0 |
rpoB | 762079 | p.Leu758Pro | missense_variant | 0.12 |
rpoC | 765803 | p.Thr812Ala | missense_variant | 0.1 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776583 | p.Gln633Arg | missense_variant | 0.11 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
Rv1258c | 1406371 | p.Val324Leu | missense_variant | 0.13 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1473170 | n.1325A>G | non_coding_transcript_exon_variant | 0.15 |
rrl | 1473657 | n.-1T>C | upstream_gene_variant | 0.11 |
rrl | 1473673 | n.16G>A | non_coding_transcript_exon_variant | 0.11 |
rrl | 1474294 | n.637C>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474736 | n.1084delG | non_coding_transcript_exon_variant | 0.12 |
fabG1 | 1674182 | c.743G>C | stop_lost&splice_region_variant | 0.12 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2102485 | c.558C>T | synonymous_variant | 0.12 |
PPE35 | 2168025 | p.Ala863Gly | missense_variant | 0.13 |
PPE35 | 2169703 | p.Asn304Asp | missense_variant | 0.22 |
PPE35 | 2169704 | c.909A>C | synonymous_variant | 0.22 |
PPE35 | 2169707 | p.Thr302Ser | missense_variant | 0.18 |
PPE35 | 2169717 | p.Asn299Ile | missense_variant | 0.17 |
PPE35 | 2169725 | c.888T>C | synonymous_variant | 0.18 |
PPE35 | 2170048 | p.Leu189Val | missense_variant | 0.11 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
eis | 2715158 | p.Val59Ile | missense_variant | 1.0 |
folC | 2746951 | c.647delA | frameshift_variant | 0.12 |
pepQ | 2860592 | c.-174T>G | upstream_gene_variant | 0.17 |
whiB7 | 3568428 | c.252A>G | synonymous_variant | 0.18 |
embC | 4242609 | p.Glu916Gly | missense_variant | 0.13 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4246217 | p.Glu995Asp | missense_variant | 0.11 |
embB | 4248133 | c.1620C>T | synonymous_variant | 0.11 |
embB | 4249732 | c.3219C>G | synonymous_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4408091 | p.Pro38Ser | missense_variant | 1.0 |