Run ID: ERR5908154
Sample name:
Date: 02-04-2023 00:51:20
Number of reads: 1825951
Percentage reads mapped: 99.5
Strain: lineage4.2.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.2 | Euro-American | H;T;LAM | None | 1.0 |
lineage4.2.1 | Euro-American (TUR) | H3;H4 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472032 | n.187G>T | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472103 | n.258G>T | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472865 | n.1020C>A | non_coding_transcript_exon_variant | 0.18 |
rrl | 1473927 | n.270C>A | non_coding_transcript_exon_variant | 0.15 |
rrl | 1474035 | n.378C>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1474060 | n.403G>A | non_coding_transcript_exon_variant | 0.15 |
rrl | 1474888 | n.1231C>T | non_coding_transcript_exon_variant | 0.25 |
rrl | 1475176 | n.1519G>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1475835 | n.2178T>C | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476154 | n.2497G>A | non_coding_transcript_exon_variant | 0.67 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2169879 | p.Phe245Cys | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
ald | 3086742 | c.-78A>C | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embB | 4246310 | c.-204C>T | upstream_gene_variant | 1.0 |
embB | 4249594 | c.3081G>A | synonymous_variant | 1.0 |
ethA | 4328376 | c.-903G>C | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |