Run ID: ERR5908229
Sample name:
Date: 02-04-2023 00:54:17
Number of reads: 633566
Percentage reads mapped: 17.25
Strain: lineage4.3.3
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.3 | Euro-American (LAM) | mainly-LAM | None | 1.0 |
lineage4.3.3 | Euro-American (LAM) | LAM;T | RD115 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 5385 | p.Val49Glu | missense_variant | 0.22 |
gyrB | 5602 | c.363C>T | synonymous_variant | 0.14 |
gyrB | 5770 | c.531C>A | synonymous_variant | 0.22 |
gyrB | 5851 | c.612G>A | synonymous_variant | 0.15 |
gyrB | 6091 | c.852G>A | synonymous_variant | 0.25 |
gyrA | 6889 | c.-413G>T | upstream_gene_variant | 0.14 |
gyrA | 6941 | c.-361C>T | upstream_gene_variant | 0.17 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 8040 | p.Gly247Ser | missense_variant | 1.0 |
gyrA | 8163 | p.Ala288Ser | missense_variant | 0.13 |
gyrA | 9035 | c.1734G>T | synonymous_variant | 0.12 |
gyrA | 9096 | p.Leu599Met | missense_variant | 0.14 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
gyrA | 9549 | p.Val750Leu | missense_variant | 0.14 |
fgd1 | 491283 | c.506delG | frameshift_variant | 0.18 |
mshA | 575176 | c.-172T>C | upstream_gene_variant | 0.17 |
mshA | 576108 | p.Ala254Gly | missense_variant | 0.25 |
mshA | 576114 | p.Arg256Pro | missense_variant | 0.33 |
mshA | 576615 | p.Arg423Gln | missense_variant | 0.15 |
ccsA | 620111 | p.Glu74Gly | missense_variant | 0.18 |
ccsA | 620589 | c.699G>A | synonymous_variant | 0.17 |
ccsA | 620856 | c.966C>A | synonymous_variant | 0.14 |
rpoB | 760106 | c.300G>A | synonymous_variant | 0.17 |
rpoB | 760791 | p.Glu329* | stop_gained | 0.14 |
rpoB | 761639 | c.1833G>T | synonymous_variant | 0.13 |
rpoB | 762243 | p.Arg813Trp | missense_variant | 0.18 |
rpoC | 762698 | c.-672C>G | upstream_gene_variant | 0.18 |
rpoC | 762863 | c.-507T>C | upstream_gene_variant | 0.44 |
rpoB | 762872 | p.Met1022Ile | missense_variant | 0.55 |
rpoB | 762878 | p.Ile1024Met | missense_variant | 0.35 |
rpoB | 762879 | p.Met1025Leu | missense_variant | 0.35 |
rpoC | 762899 | c.-471G>C | upstream_gene_variant | 0.58 |
rpoC | 762905 | c.-465C>T | upstream_gene_variant | 0.6 |
rpoB | 762925 | p.Thr1040Ile | missense_variant | 0.56 |
rpoC | 762929 | c.-441G>C | upstream_gene_variant | 0.54 |
rpoB | 762939 | p.Met1045Leu | missense_variant | 0.54 |
rpoB | 762942 | p.Ile1046Val | missense_variant | 0.54 |
rpoC | 762965 | c.-405T>C | upstream_gene_variant | 0.38 |
rpoC | 762980 | c.-390T>C | upstream_gene_variant | 0.29 |
rpoC | 762983 | c.-387C>T | upstream_gene_variant | 0.2 |
rpoC | 762989 | c.-381G>C | upstream_gene_variant | 0.2 |
rpoC | 762998 | c.-372G>A | upstream_gene_variant | 0.15 |
rpoC | 763139 | c.-231C>A | upstream_gene_variant | 0.14 |
rpoB | 763141 | p.Pro1112Arg | missense_variant | 0.14 |
rpoC | 763416 | p.Thr16Ile | missense_variant | 0.17 |
rpoC | 764269 | c.900G>A | synonymous_variant | 0.18 |
rpoC | 764602 | c.1233C>T | synonymous_variant | 0.21 |
rpoC | 764605 | c.1236G>C | synonymous_variant | 0.22 |
rpoC | 764611 | c.1242G>T | synonymous_variant | 0.22 |
rpoC | 764623 | c.1254C>G | synonymous_variant | 0.21 |
rpoC | 764632 | c.1263T>C | synonymous_variant | 0.27 |
rpoC | 764641 | c.1272C>T | synonymous_variant | 0.21 |
rpoC | 764650 | c.1281G>T | synonymous_variant | 0.22 |
rpoC | 764660 | p.Val431Thr | missense_variant | 0.22 |
rpoC | 764665 | c.1296C>G | synonymous_variant | 0.23 |
rpoC | 764668 | c.1299C>G | synonymous_variant | 0.23 |
rpoC | 764672 | p.Gln435Glu | missense_variant | 0.23 |
rpoC | 764677 | c.1308C>G | synonymous_variant | 0.23 |
rpoC | 764687 | p.Gln440Glu | missense_variant | 0.32 |
rpoC | 764695 | c.1326T>C | synonymous_variant | 0.33 |
rpoC | 764705 | p.Leu446Lys | missense_variant | 0.35 |
rpoC | 764995 | c.1626C>G | synonymous_variant | 1.0 |
rpoC | 765351 | p.Ala661Glu | missense_variant | 0.12 |
rpoC | 765427 | c.2058G>A | synonymous_variant | 0.2 |
rpoC | 765433 | p.Met688Ile | missense_variant | 0.17 |
rpoC | 765759 | p.Asn797Ile | missense_variant | 0.12 |
rpoC | 766245 | p.Gln959Pro | missense_variant | 0.11 |
rpoC | 766513 | c.3144C>T | synonymous_variant | 0.14 |
rpoC | 766775 | p.Arg1136Cys | missense_variant | 0.22 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 775644 | p.Arg946Leu | missense_variant | 0.15 |
mmpL5 | 775831 | p.Ala884Ser | missense_variant | 0.12 |
mmpL5 | 776146 | p.Ala779Ser | missense_variant | 0.25 |
mmpL5 | 776756 | c.1725C>T | synonymous_variant | 0.5 |
mmpL5 | 777201 | p.Ala427Asp | missense_variant | 0.15 |
mmpR5 | 778247 | c.-743G>T | upstream_gene_variant | 0.22 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rpsL | 781796 | p.Met79Ile | missense_variant | 0.13 |
rpsL | 781854 | p.Arg99Ser | missense_variant | 0.4 |
rplC | 800931 | c.123G>A | synonymous_variant | 0.18 |
rplC | 801236 | p.Ala143Val | missense_variant | 0.17 |
fbiC | 1303010 | p.Arg27Gln | missense_variant | 0.15 |
fbiC | 1303600 | p.Glu224Lys | missense_variant | 0.22 |
fbiC | 1303644 | c.714G>A | synonymous_variant | 0.18 |
fbiC | 1303769 | p.Ser280Leu | missense_variant | 0.15 |
fbiC | 1303843 | p.Ala305Ser | missense_variant | 0.2 |
fbiC | 1304722 | p.Glu598Lys | missense_variant | 0.13 |
fbiC | 1304790 | c.1860C>A | synonymous_variant | 0.22 |
fbiC | 1305483 | c.2553C>T | synonymous_variant | 0.14 |
Rv1258c | 1406406 | p.Pro312Leu | missense_variant | 0.18 |
Rv1258c | 1407008 | c.333C>T | synonymous_variant | 0.22 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1471876 | n.31G>A | non_coding_transcript_exon_variant | 0.15 |
rrs | 1471877 | n.32A>G | non_coding_transcript_exon_variant | 0.15 |
rrs | 1471884 | n.39C>A | non_coding_transcript_exon_variant | 0.15 |
rrs | 1471892 | n.47G>A | non_coding_transcript_exon_variant | 0.27 |
rrs | 1471893 | n.48T>G | non_coding_transcript_exon_variant | 0.27 |
rrs | 1471896 | n.51T>C | non_coding_transcript_exon_variant | 0.33 |
rrs | 1471917 | n.72G>A | non_coding_transcript_exon_variant | 0.33 |
rrs | 1471918 | n.74_78delAAGGT | non_coding_transcript_exon_variant | 0.33 |
rrs | 1471934 | n.89A>T | non_coding_transcript_exon_variant | 0.33 |
rrs | 1471935 | n.92_96delCTCGA | non_coding_transcript_exon_variant | 0.38 |
rrs | 1471948 | n.103A>G | non_coding_transcript_exon_variant | 0.38 |
rrs | 1472052 | n.207A>G | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472160 | n.315C>T | non_coding_transcript_exon_variant | 0.6 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472181 | n.336G>A | non_coding_transcript_exon_variant | 0.71 |
rrs | 1472210 | n.365A>C | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472215 | n.370A>G | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472225 | n.380C>A | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472234 | n.389T>C | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472240 | n.395G>C | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472302 | n.457G>A | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472344 | n.499C>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472349 | n.504A>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472374 | n.529T>A | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472379 | n.534T>G | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472382 | n.537G>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472390 | n.545T>C | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472391 | n.546C>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.53 |
rrs | 1472715 | n.870C>A | non_coding_transcript_exon_variant | 0.53 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.53 |
rrs | 1472734 | n.889C>T | non_coding_transcript_exon_variant | 0.72 |
rrs | 1472741 | n.896G>A | non_coding_transcript_exon_variant | 0.72 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.72 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.92 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 0.9 |
rrs | 1472803 | n.958T>A | non_coding_transcript_exon_variant | 0.93 |
rrs | 1472812 | n.967A>C | non_coding_transcript_exon_variant | 0.92 |
rrs | 1472887 | n.1042G>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473128 | n.1283C>T | non_coding_transcript_exon_variant | 0.15 |
rrs | 1473129 | n.1286delG | non_coding_transcript_exon_variant | 0.15 |
rrs | 1473145 | n.1300C>T | non_coding_transcript_exon_variant | 0.12 |
rrs | 1473147 | n.1302G>T | non_coding_transcript_exon_variant | 0.12 |
rrs | 1473148 | n.1303G>C | non_coding_transcript_exon_variant | 0.12 |
rrs | 1473149 | n.1304G>C | non_coding_transcript_exon_variant | 0.12 |
rrs | 1473162 | n.1317C>G | non_coding_transcript_exon_variant | 0.22 |
rrs | 1473163 | n.1318C>G | non_coding_transcript_exon_variant | 0.22 |
rrs | 1473164 | n.1319C>G | non_coding_transcript_exon_variant | 0.22 |
rrs | 1473166 | n.1321G>A | non_coding_transcript_exon_variant | 0.25 |
rrs | 1473173 | n.1328C>T | non_coding_transcript_exon_variant | 0.29 |
rrs | 1473177 | n.1332G>A | non_coding_transcript_exon_variant | 0.29 |
rrs | 1473192 | n.1347A>G | non_coding_transcript_exon_variant | 0.33 |
rrs | 1473205 | n.1360T>C | non_coding_transcript_exon_variant | 0.38 |
rrs | 1473322 | n.1477T>C | non_coding_transcript_exon_variant | 0.27 |
rrs | 1473327 | n.1482A>G | non_coding_transcript_exon_variant | 0.27 |
rrs | 1473328 | n.1483C>T | non_coding_transcript_exon_variant | 0.27 |
rrs | 1473352 | n.1507C>G | non_coding_transcript_exon_variant | 0.5 |
rrs | 1473353 | n.1508C>G | non_coding_transcript_exon_variant | 0.5 |
rrs | 1473358 | n.1513G>C | non_coding_transcript_exon_variant | 0.5 |
rrs | 1473359 | n.1514G>C | non_coding_transcript_exon_variant | 0.5 |
rrs | 1473374 | n.1529C>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1473715 | n.58G>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1474277 | n.620C>T | non_coding_transcript_exon_variant | 0.29 |
rrl | 1474558 | n.901G>A | non_coding_transcript_exon_variant | 0.25 |
rrl | 1474582 | n.925T>C | non_coding_transcript_exon_variant | 0.33 |
rrl | 1474583 | n.926C>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1474584 | n.927C>G | non_coding_transcript_exon_variant | 0.33 |
rrl | 1474586 | n.929T>A | non_coding_transcript_exon_variant | 0.33 |
rrl | 1474587 | n.930G>C | non_coding_transcript_exon_variant | 0.33 |
rrl | 1474602 | n.945C>G | non_coding_transcript_exon_variant | 0.4 |
rrl | 1474609 | n.952G>C | non_coding_transcript_exon_variant | 0.4 |
rrl | 1474610 | n.953C>T | non_coding_transcript_exon_variant | 0.4 |
rrl | 1474838 | n.1181C>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1474864 | n.1207C>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1474869 | n.1212G>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1474875 | n.1218G>A | non_coding_transcript_exon_variant | 0.14 |
rrl | 1474876 | n.1219T>A | non_coding_transcript_exon_variant | 0.17 |
rrl | 1474883 | n.1226T>C | non_coding_transcript_exon_variant | 0.17 |
rrl | 1474893 | n.1236G>A | non_coding_transcript_exon_variant | 0.18 |
rrl | 1474899 | n.1242T>C | non_coding_transcript_exon_variant | 0.18 |
rrl | 1475539 | n.1882A>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1475540 | n.1883C>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1475545 | n.1888T>G | non_coding_transcript_exon_variant | 0.35 |
rrl | 1475553 | n.1896G>C | non_coding_transcript_exon_variant | 0.33 |
rrl | 1475555 | n.1898T>G | non_coding_transcript_exon_variant | 0.38 |
rrl | 1475571 | n.1914A>T | non_coding_transcript_exon_variant | 0.38 |
rrl | 1475575 | n.1918C>A | non_coding_transcript_exon_variant | 0.38 |
rrl | 1475577 | n.1920C>G | non_coding_transcript_exon_variant | 0.38 |
rrl | 1475589 | n.1932G>A | non_coding_transcript_exon_variant | 0.15 |
rrl | 1475684 | n.2027G>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475791 | n.2134A>G | non_coding_transcript_exon_variant | 0.25 |
rrl | 1475803 | n.2146T>C | non_coding_transcript_exon_variant | 0.62 |
rrl | 1475804 | n.2147G>C | non_coding_transcript_exon_variant | 0.62 |
rrl | 1475816 | n.2159C>G | non_coding_transcript_exon_variant | 0.5 |
rrl | 1475817 | n.2160A>G | non_coding_transcript_exon_variant | 0.56 |
rrl | 1475881 | n.2224T>C | non_coding_transcript_exon_variant | 0.47 |
rrl | 1475883 | n.2226A>C | non_coding_transcript_exon_variant | 0.47 |
rrl | 1475892 | n.2235A>C | non_coding_transcript_exon_variant | 0.44 |
rrl | 1475894 | n.2237C>G | non_coding_transcript_exon_variant | 0.4 |
rrl | 1475900 | n.2243A>G | non_coding_transcript_exon_variant | 0.36 |
rrl | 1475904 | n.2247G>A | non_coding_transcript_exon_variant | 0.22 |
rrl | 1475906 | n.2249C>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476203 | n.2546G>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476252 | n.2595T>G | non_coding_transcript_exon_variant | 0.47 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.53 |
rrl | 1476266 | n.2609G>A | non_coding_transcript_exon_variant | 0.6 |
rrl | 1476279 | n.2622G>C | non_coding_transcript_exon_variant | 0.56 |
rrl | 1476280 | n.2623A>C | non_coding_transcript_exon_variant | 0.56 |
rrl | 1476281 | n.2624T>A | non_coding_transcript_exon_variant | 0.56 |
rrl | 1476293 | n.2636C>T | non_coding_transcript_exon_variant | 0.56 |
rrl | 1476294 | n.2637A>G | non_coding_transcript_exon_variant | 0.56 |
rrl | 1476295 | n.2638C>G | non_coding_transcript_exon_variant | 0.56 |
rrl | 1476296 | n.2639C>T | non_coding_transcript_exon_variant | 0.6 |
rrl | 1476311 | n.2654G>C | non_coding_transcript_exon_variant | 0.76 |
rrl | 1476312 | n.2655T>C | non_coding_transcript_exon_variant | 0.76 |
rrl | 1476313 | n.2656G>A | non_coding_transcript_exon_variant | 0.76 |
rrl | 1476336 | n.2679C>T | non_coding_transcript_exon_variant | 0.88 |
rrl | 1476338 | n.2681C>T | non_coding_transcript_exon_variant | 0.9 |
rrl | 1476339 | n.2682G>A | non_coding_transcript_exon_variant | 0.91 |
rrl | 1476356 | n.2699C>T | non_coding_transcript_exon_variant | 0.94 |
rrl | 1476359 | n.2702C>G | non_coding_transcript_exon_variant | 0.91 |
rrl | 1476381 | n.2724G>C | non_coding_transcript_exon_variant | 0.96 |
rrl | 1476383 | n.2726T>A | non_coding_transcript_exon_variant | 0.96 |
rrl | 1476384 | n.2727G>A | non_coding_transcript_exon_variant | 0.96 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.94 |
rrl | 1476411 | n.2754G>A | non_coding_transcript_exon_variant | 0.94 |
rrl | 1476442 | n.2785T>A | non_coding_transcript_exon_variant | 0.95 |
rrl | 1476443 | n.2786G>T | non_coding_transcript_exon_variant | 0.95 |
rrl | 1476455 | n.2798C>A | non_coding_transcript_exon_variant | 0.9 |
rrl | 1476456 | n.2799A>T | non_coding_transcript_exon_variant | 0.92 |
rrl | 1476463 | n.2806C>T | non_coding_transcript_exon_variant | 0.92 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.92 |
rrl | 1476470 | n.2813C>T | non_coding_transcript_exon_variant | 0.92 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.92 |
rrl | 1476501 | n.2844C>T | non_coding_transcript_exon_variant | 0.9 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.89 |
rrl | 1476512 | n.2855C>T | non_coding_transcript_exon_variant | 0.79 |
rrl | 1476517 | n.2860C>T | non_coding_transcript_exon_variant | 0.74 |
rrl | 1476519 | n.2862C>G | non_coding_transcript_exon_variant | 0.74 |
rrl | 1476521 | n.2864C>T | non_coding_transcript_exon_variant | 0.74 |
rrl | 1476524 | n.2867C>T | non_coding_transcript_exon_variant | 0.74 |
rrl | 1476525 | n.2868A>C | non_coding_transcript_exon_variant | 0.74 |
rrl | 1476529 | n.2872A>G | non_coding_transcript_exon_variant | 0.74 |
rrl | 1476536 | n.2879G>A | non_coding_transcript_exon_variant | 0.74 |
rrl | 1476537 | n.2880A>G | non_coding_transcript_exon_variant | 0.74 |
rrl | 1476538 | n.2881A>G | non_coding_transcript_exon_variant | 0.74 |
rrl | 1476540 | n.2883C>T | non_coding_transcript_exon_variant | 0.71 |
rrl | 1476567 | n.2910C>T | non_coding_transcript_exon_variant | 0.76 |
rrl | 1476572 | n.2915G>A | non_coding_transcript_exon_variant | 0.82 |
rrl | 1476573 | n.2916A>T | non_coding_transcript_exon_variant | 0.82 |
rrl | 1476584 | n.2927C>T | non_coding_transcript_exon_variant | 0.7 |
inhA | 1673919 | c.-283G>A | upstream_gene_variant | 0.4 |
rpsA | 1833882 | p.Gly114Asp | missense_variant | 0.25 |
rpsA | 1834557 | p.Ala339Val | missense_variant | 0.13 |
rpsA | 1834626 | p.Leu362Pro | missense_variant | 0.18 |
rpsA | 1834836 | p.Met432Thr | missense_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
tlyA | 1917988 | p.Ala17Ser | missense_variant | 0.22 |
tlyA | 1918543 | p.Gln202* | stop_gained | 0.25 |
ndh | 2101790 | p.Thr418Lys | missense_variant | 0.17 |
ndh | 2102024 | p.Ala340Glu | missense_variant | 0.2 |
ndh | 2102247 | p.Val266Ile | missense_variant | 0.14 |
ndh | 2102346 | p.Ala233Ser | missense_variant | 0.18 |
katG | 2155220 | c.892T>C | synonymous_variant | 0.13 |
katG | 2155251 | c.861A>G | synonymous_variant | 0.15 |
katG | 2155434 | c.678G>C | synonymous_variant | 0.13 |
katG | 2155446 | c.666G>C | synonymous_variant | 0.21 |
katG | 2155449 | c.663C>G | synonymous_variant | 0.14 |
katG | 2155742 | p.Gly124Cys | missense_variant | 0.33 |
katG | 2156196 | c.-85C>T | upstream_gene_variant | 1.0 |
katG | 2156292 | c.-181G>A | upstream_gene_variant | 0.2 |
katG | 2156554 | c.-443G>A | upstream_gene_variant | 0.25 |
PPE35 | 2168258 | c.2355G>T | synonymous_variant | 0.5 |
PPE35 | 2168665 | c.1947delT | frameshift_variant | 0.33 |
PPE35 | 2169283 | p.Arg444Ser | missense_variant | 0.17 |
Rv1979c | 2221896 | c.1269G>T | synonymous_variant | 0.4 |
Rv1979c | 2221905 | c.1260T>C | synonymous_variant | 0.4 |
Rv1979c | 2222948 | p.Arg73Gly | missense_variant | 0.33 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2288989 | p.Leu85Met | missense_variant | 0.14 |
pncA | 2289106 | p.Ala46Ser | missense_variant | 0.13 |
pncA | 2289807 | c.-566G>T | upstream_gene_variant | 0.18 |
pncA | 2290152 | c.-911G>T | upstream_gene_variant | 0.67 |
kasA | 2518919 | p.Gly269Ser | missense_variant | 1.0 |
eis | 2715559 | c.-227G>T | upstream_gene_variant | 0.14 |
eis | 2715574 | c.-242T>A | upstream_gene_variant | 0.12 |
ahpC | 2726055 | c.-138G>T | upstream_gene_variant | 0.12 |
ahpC | 2726116 | c.-77T>C | upstream_gene_variant | 0.15 |
ahpC | 2726512 | p.Pro107Leu | missense_variant | 0.29 |
folC | 2746340 | p.Ala420Val | missense_variant | 1.0 |
folC | 2747423 | p.Ser59Leu | missense_variant | 0.14 |
pepQ | 2859932 | p.Leu163Met | missense_variant | 0.12 |
Rv2752c | 3065121 | p.Lys357Asn | missense_variant | 1.0 |
Rv2752c | 3065347 | p.Ala282Asp | missense_variant | 0.22 |
Rv2752c | 3065501 | p.Gly231* | stop_gained | 0.18 |
thyA | 3073868 | p.Thr202Ala | missense_variant | 1.0 |
thyA | 3073882 | p.Gly197Asp | missense_variant | 0.12 |
ald | 3086646 | c.-174G>A | upstream_gene_variant | 0.15 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fbiD | 3339332 | p.Ala72Val | missense_variant | 0.15 |
fbiD | 3339452 | p.Val112Glu | missense_variant | 0.14 |
fbiD | 3339685 | p.Asp190Tyr | missense_variant | 0.12 |
fbiD | 3339728 | p.Gly204Glu | missense_variant | 0.15 |
fbiD | 3339747 | c.630G>T | synonymous_variant | 0.2 |
Rv3083 | 3449658 | c.1155C>T | synonymous_variant | 0.18 |
Rv3083 | 3449968 | p.Ala489Ser | missense_variant | 0.13 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3474104 | p.Asp33Val | missense_variant | 0.2 |
fprA | 3474983 | p.Gly326Val | missense_variant | 0.18 |
fprA | 3475303 | p.Ala433Ser | missense_variant | 0.12 |
whiB7 | 3568650 | c.30C>A | synonymous_variant | 0.18 |
Rv3236c | 3612759 | p.Gly120Ser | missense_variant | 0.29 |
Rv3236c | 3613003 | c.114G>A | synonymous_variant | 0.29 |
fbiB | 3641644 | p.Ala37Glu | missense_variant | 0.15 |
rpoA | 3878041 | p.Gly156Asp | missense_variant | 0.33 |
clpC1 | 4038287 | c.2418C>T | synonymous_variant | 1.0 |
clpC1 | 4039934 | c.771G>T | synonymous_variant | 0.14 |
panD | 4044318 | c.-37G>T | upstream_gene_variant | 0.12 |
embC | 4241119 | c.1257C>A | synonymous_variant | 0.12 |
embC | 4241191 | c.1329C>A | synonymous_variant | 0.22 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4244452 | p.Pro407Leu | missense_variant | 0.15 |
embA | 4244993 | c.1761C>T | synonymous_variant | 0.15 |
embA | 4246201 | p.Gln990Leu | missense_variant | 0.18 |
embB | 4246613 | p.Gly34Trp | missense_variant | 0.29 |
embB | 4246674 | p.Ala54Val | missense_variant | 0.33 |
embB | 4247162 | p.Leu217Val | missense_variant | 0.18 |
embB | 4248628 | c.2115C>G | synonymous_variant | 0.13 |
embB | 4249393 | p.Trp960Cys | missense_variant | 0.14 |
embB | 4249625 | p.Gly1038Arg | missense_variant | 0.14 |
aftB | 4267491 | p.Ala449Glu | missense_variant | 0.15 |
aftB | 4267615 | p.Val408Ile | missense_variant | 0.14 |
aftB | 4269456 | c.-620G>A | upstream_gene_variant | 0.17 |
ubiA | 4269608 | p.Arg76Ser | missense_variant | 0.22 |
ethA | 4326212 | p.Arg421Pro | missense_variant | 0.18 |
ethA | 4326419 | p.Ala352Val | missense_variant | 0.17 |
ethR | 4327721 | p.Arg58Lys | missense_variant | 0.18 |
ethA | 4327767 | c.-294C>G | upstream_gene_variant | 0.14 |
ethR | 4328099 | p.Phe184Tyr | missense_variant | 0.2 |
ethA | 4328422 | c.-949G>T | upstream_gene_variant | 0.18 |
whiB6 | 4338335 | p.Ala63Thr | missense_variant | 0.12 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
whiB6 | 4338678 | c.-157G>T | upstream_gene_variant | 0.17 |
gid | 4407753 | p.Met150Ile | missense_variant | 0.17 |
gid | 4408156 | p.Leu16Arg | missense_variant | 1.0 |
Rv2752c | 3065039 | c.1070_1152delNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT | frameshift_variant | 1.0 |