TB-Profiler result

Run: ERR751942

Summary

Run ID: ERR751942

Sample name:

Date: 19-10-2023 08:43:01

Number of reads: 4440498

Percentage reads mapped: 99.59

Strain: lineage4.2

Drug-resistance: Sensitive


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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Rifampicin
Isoniazid
Ethambutol
Pyrazinamide
Streptomycin
Fluoroquinolones
Moxifloxacin
Ofloxacin
Levofloxacin
Ciprofloxacin
Aminoglycosides
Amikacin
Capreomycin
Kanamycin
Cycloserine
Ethionamide
Clofazimine
Para-aminosalicylic_acid
Delamanid
Bedaquiline
Linezolid
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.2 Euro-American H;T;LAM None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 9304 p.Gly668Asp missense_variant 1.0
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 778453 p.Thr10Ala missense_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
tlyA 1917972 c.33A>G synonymous_variant 1.0
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
ald 3086742 c.-78A>C upstream_gene_variant 0.99
ald 3086788 c.-32T>C upstream_gene_variant 1.0
fbiD 3339343 p.Gly76Ser missense_variant 1.0
fbiD 3339349 p.Asp78Asn missense_variant 1.0
Rv3083 3449771 p.Pro423Leu missense_variant 0.99
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
Rv3236c 3612320 p.Leu266Pro missense_variant 1.0
clpC1 4040872 c.-168C>T upstream_gene_variant 1.0
embC 4240047 p.Pro62Arg missense_variant 1.0
embA 4242643 c.-590C>T upstream_gene_variant 1.0
ethA 4328322 c.-849G>A upstream_gene_variant 1.0
whiB6 4338309 c.213T>C synonymous_variant 1.0
whiB6 4338505 p.Ala6Glu missense_variant 1.0
whiB6 4338595 c.-75delG upstream_gene_variant 1.0