Run ID: ERR7764409
Sample name:
Date: 02-04-2023 05:46:52
Number of reads: 1776818
Percentage reads mapped: 99.61
Strain: lineage4.3.4.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.3 | Euro-American (LAM) | mainly-LAM | None | 1.0 |
lineage4.3.4 | Euro-American (LAM) | LAM | RD174 | 0.99 |
lineage4.3.4.1 | Euro-American (LAM) | LAM1;LAM2 | RD174 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
mshA | 576089 | c.750_769delTGATCGGCGCGCGGCCCGGG | frameshift_variant | 0.6 |
mshA | 576616 | c.1269G>C | synonymous_variant | 0.33 |
rpoC | 764367 | p.Gly333Ala | missense_variant | 0.36 |
rpoC | 764995 | c.1626C>G | synonymous_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1476252 | n.2595T>C | non_coding_transcript_exon_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2170048 | p.Leu189Val | missense_variant | 0.18 |
PPE35 | 2170053 | p.Thr187Ser | missense_variant | 0.2 |
Rv1979c | 2222854 | p.Ile104Thr | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2519071 | p.Asp319Glu | missense_variant | 0.19 |
pepQ | 2860159 | p.Ala87Gly | missense_variant | 0.26 |
thyA | 3073868 | p.Thr202Ala | missense_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fbiD | 3339734 | p.Ala206Gly | missense_variant | 0.6 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
Rv3236c | 3612009 | p.Ala370Thr | missense_variant | 1.0 |
rpoA | 3877509 | c.999G>A | synonymous_variant | 1.0 |
clpC1 | 4038287 | c.2418C>T | synonymous_variant | 1.0 |
clpC1 | 4039991 | c.714G>A | synonymous_variant | 1.0 |
embC | 4240409 | p.Pro183Ala | missense_variant | 0.19 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4245835 | p.Leu868Arg | missense_variant | 0.35 |
embB | 4246527 | p.Ala5Gly | missense_variant | 0.33 |
embB | 4247016 | p.Ser168Trp | missense_variant | 0.4 |
embB | 4247028 | p.Leu172Arg | missense_variant | 0.38 |
embB | 4247033 | p.Ser174Arg | missense_variant | 0.29 |
aftB | 4268619 | p.Val73Gly | missense_variant | 0.31 |
aftB | 4268623 | p.Trp72Gly | missense_variant | 0.27 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4408156 | p.Leu16Arg | missense_variant | 1.0 |