Run ID: ERR8975159
Sample name:
Date: 02-04-2023 08:42:33
Number of reads: 3262787
Percentage reads mapped: 99.15
Strain: lineage4
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 7914 | p.Leu205Val | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
rpoC | 765150 | p.Gly594Glu | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 777211 | p.Asp424Asn | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1473224 | n.1379G>A | non_coding_transcript_exon_variant | 1.0 |
tlyA | 1917806 | c.-134T>G | upstream_gene_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518649 | p.Ala179Ser | missense_variant | 0.25 |
folC | 2746243 | c.1356C>T | synonymous_variant | 0.15 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
ald | 3087902 | c.1083G>A | synonymous_variant | 0.14 |
fbiD | 3339486 | c.369G>A | synonymous_variant | 0.15 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
embC | 4242803 | p.Val981Leu | missense_variant | 1.0 |
embB | 4249408 | c.2895G>A | synonymous_variant | 1.0 |
aftB | 4267736 | c.1101C>T | synonymous_variant | 0.15 |
aftB | 4267756 | p.Lys361Glu | missense_variant | 0.12 |
whiB6 | 4338210 | c.312C>T | synonymous_variant | 0.18 |
whiB6 | 4338376 | p.Ala49Asp | missense_variant | 0.66 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |