Run ID: ERR9117750
Sample name:
Date: 02-04-2023 09:30:24
Number of reads: 1420542
Percentage reads mapped: 95.3
Strain: lineage4.5
Drug-resistance: HR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.5 | Euro-American | H;T | RD122 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rrs | 1472362 | n.517C>T | non_coding_transcript_exon_variant | 1.0 | streptomycin |
katG | 2155168 | p.Ser315Thr | missense_variant | 1.0 | isoniazid |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 7892 | c.591G>A | synonymous_variant | 0.98 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
ccsA | 620029 | c.139C>T | synonymous_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
Rv1258c | 1406101 | p.Pro414Ser | missense_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472517 | n.672T>A | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472518 | n.673G>T | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472530 | n.685G>A | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472537 | n.692C>T | non_coding_transcript_exon_variant | 0.44 |
rrs | 1472544 | n.699C>A | non_coding_transcript_exon_variant | 0.44 |
rrs | 1472545 | n.700A>T | non_coding_transcript_exon_variant | 0.44 |
rrs | 1472566 | n.721G>A | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472579 | n.734G>C | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472580 | n.735C>T | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472598 | n.753A>C | non_coding_transcript_exon_variant | 0.8 |
rrs | 1472599 | n.754G>T | non_coding_transcript_exon_variant | 0.8 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472655 | n.810G>A | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472658 | n.813G>A | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472661 | n.816A>G | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472955 | n.1110C>T | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472973 | n.1128A>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1473035 | n.1190G>A | non_coding_transcript_exon_variant | 0.43 |
rrs | 1473055 | n.1210C>T | non_coding_transcript_exon_variant | 0.29 |
rrs | 1473056 | n.1211A>T | non_coding_transcript_exon_variant | 0.29 |
rrs | 1473066 | n.1221A>G | non_coding_transcript_exon_variant | 0.22 |
rrl | 1475803 | n.2146T>C | non_coding_transcript_exon_variant | 0.5 |
rrl | 1475804 | n.2147G>C | non_coding_transcript_exon_variant | 0.5 |
rrl | 1475816 | n.2159C>G | non_coding_transcript_exon_variant | 0.5 |
rrl | 1475817 | n.2160A>G | non_coding_transcript_exon_variant | 0.5 |
rrl | 1475858 | n.2201T>C | non_coding_transcript_exon_variant | 0.5 |
rrl | 1475866 | n.2209T>A | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476225 | n.2568T>G | non_coding_transcript_exon_variant | 0.31 |
rrl | 1476227 | n.2570C>T | non_coding_transcript_exon_variant | 0.31 |
rrl | 1476229 | n.2572C>T | non_coding_transcript_exon_variant | 0.31 |
rrl | 1476250 | n.2593C>G | non_coding_transcript_exon_variant | 0.31 |
rrl | 1476251 | n.2594T>C | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476257 | n.2600G>C | non_coding_transcript_exon_variant | 0.27 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.35 |
rrl | 1476280 | n.2623A>C | non_coding_transcript_exon_variant | 0.3 |
rrl | 1476293 | n.2636C>T | non_coding_transcript_exon_variant | 0.3 |
rrl | 1476294 | n.2637A>G | non_coding_transcript_exon_variant | 0.26 |
rrl | 1476295 | n.2638C>G | non_coding_transcript_exon_variant | 0.26 |
rrl | 1476296 | n.2639C>T | non_coding_transcript_exon_variant | 0.26 |
rrl | 1476297 | n.2640C>T | non_coding_transcript_exon_variant | 0.26 |
rrl | 1476301 | n.2644A>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476302 | n.2645G>A | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476311 | n.2654G>C | non_coding_transcript_exon_variant | 0.32 |
rrl | 1476312 | n.2655T>C | non_coding_transcript_exon_variant | 0.32 |
rrl | 1476313 | n.2656G>A | non_coding_transcript_exon_variant | 0.32 |
rrl | 1476332 | n.2675G>C | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476338 | n.2681C>T | non_coding_transcript_exon_variant | 0.35 |
rrl | 1476353 | n.2696G>T | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.43 |
rrl | 1476369 | n.2712C>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476372 | n.2715T>C | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.32 |
rrl | 1476383 | n.2726T>A | non_coding_transcript_exon_variant | 0.32 |
rrl | 1476425 | n.2768G>T | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.32 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.24 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.2 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2103225 | c.-183A>C | upstream_gene_variant | 0.29 |
PPE35 | 2170521 | p.Trp31* | stop_gained | 1.0 |
PPE35 | 2170568 | p.Ile15Met | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
ahpC | 2726338 | p.Val49Gly | missense_variant | 0.26 |
ahpC | 2726341 | p.Val50Gly | missense_variant | 0.27 |
thyX | 3067963 | c.-19_-18insAC | upstream_gene_variant | 1.0 |
thyA | 3074487 | c.-16T>G | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
Rv3236c | 3612666 | p.Val151Met | missense_variant | 1.0 |
rpoA | 3878575 | c.-68C>T | upstream_gene_variant | 1.0 |
clpC1 | 4038318 | p.Pro796Leu | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |