Run ID: ERR9117837
Sample name:
Date: 02-04-2023 09:32:52
Number of reads: 1051033
Percentage reads mapped: 94.94
Strain: lineage4.8.2
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.8 | Euro-American (mainly T) | T1;T2;T3;T5 | RD219 | 1.0 |
lineage4.8.2 | Euro-American (mainly T) | T1;T2;T3;T5 | RD219 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rrs | 1472733 | n.888G>A | non_coding_transcript_exon_variant | 0.44 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 8135 | c.834C>T | synonymous_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776891 | p.Gln530His | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472108 | n.263C>T | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472122 | n.277G>T | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472123 | n.278A>T | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472124 | n.279C>T | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472155 | n.310C>T | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472160 | n.315C>T | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472537 | n.692C>T | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472544 | n.699C>A | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472545 | n.700A>T | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472566 | n.721G>A | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472579 | n.734G>T | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472598 | n.753A>C | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472599 | n.754G>T | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472655 | n.810G>A | non_coding_transcript_exon_variant | 0.31 |
rrs | 1472658 | n.813G>A | non_coding_transcript_exon_variant | 0.31 |
rrs | 1472661 | n.816A>G | non_coding_transcript_exon_variant | 0.31 |
rrs | 1472670 | n.825G>T | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472673 | n.828T>G | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472675 | n.830T>C | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472677 | n.832C>T | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472681 | n.837_838delTT | non_coding_transcript_exon_variant | 0.36 |
rrs | 1472687 | n.843dupT | non_coding_transcript_exon_variant | 0.36 |
rrs | 1472690 | n.845C>A | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472697 | n.852T>C | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.4 |
rrl | 1474001 | n.344C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474249 | n.592G>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474269 | n.612C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475774 | n.2117C>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1475777 | n.2120A>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1475803 | n.2146T>C | non_coding_transcript_exon_variant | 0.5 |
rrl | 1475804 | n.2147G>C | non_coding_transcript_exon_variant | 0.5 |
rrl | 1475816 | n.2159C>G | non_coding_transcript_exon_variant | 0.5 |
rrl | 1475817 | n.2160A>G | non_coding_transcript_exon_variant | 0.67 |
fabG1 | 1673380 | c.-60C>G | upstream_gene_variant | 0.13 |
inhA | 1674373 | c.176delC | frameshift_variant | 0.13 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2155277 | p.Gly279Ser | missense_variant | 0.11 |
PPE35 | 2168149 | p.Pro822Ser | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
folC | 2747472 | p.Ile43Phe | missense_variant | 0.11 |
clpC1 | 4039729 | p.Asp326Asn | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4243604 | c.372G>C | synonymous_variant | 0.11 |
embA | 4243605 | p.Val125Thr | missense_variant | 0.11 |
embB | 4246544 | p.Thr11Pro | missense_variant | 0.12 |
embB | 4246548 | p.Pro12Gln | missense_variant | 0.11 |
embB | 4246555 | c.42G>C | synonymous_variant | 0.11 |
embB | 4246556 | p.Ala15Pro | missense_variant | 0.11 |
embB | 4246563 | p.Leu17Trp | missense_variant | 0.11 |
embB | 4246567 | c.54G>T | synonymous_variant | 0.11 |
aftB | 4267646 | p.Asp397Glu | missense_variant | 0.1 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
Rv3083 | 3448507 | c.5_*1408del | frameshift_variant&stop_lost&splice_region_variant | 1.0 |