TB-Profiler result

Run: ERR9896152
Summary

Run ID: ERR9896152

Sample name:

Date: 02-04-2023 13:29:23

Number of reads: 663852

Percentage reads mapped: 99.28

Strain: lineage4.2.2.1

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.2 Euro-American H;T;LAM None 1.0
lineage4.2.2 Euro-American (Ural) T;LAM7-TUR None 1.0
lineage4.2.2.1 Euro-American LAM7-TUR None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 9304 p.Gly668Asp missense_variant 1.0
mshA 576077 c.730C>T synonymous_variant 1.0
mshA 576292 c.945C>A synonymous_variant 0.12
mmpL5 775639 p.Ile948Val missense_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
tlyA 1917972 c.33A>G synonymous_variant 1.0
Rv1979c 2221905 c.1260T>G synonymous_variant 1.0
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
ribD 2986747 c.-92G>T upstream_gene_variant 1.0
ribD 2987016 p.Gly60Trp missense_variant 0.25
ribD 2987145 p.Arg103Ser missense_variant 0.18
Rv2752c 3066280 c.-89C>T upstream_gene_variant 1.0
ald 3086742 c.-78A>C upstream_gene_variant 1.0
ald 3086788 c.-32T>C upstream_gene_variant 1.0
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
whiB7 3568841 c.-162T>A upstream_gene_variant 0.14
clpC1 4038306 p.Val800Ala missense_variant 0.18
panD 4044441 c.-160T>C upstream_gene_variant 0.12
embC 4241707 c.1845G>T synonymous_variant 0.11
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embA 4244294 c.1062G>C synonymous_variant 1.0
embB 4246430 c.-84C>A upstream_gene_variant 0.17
embB 4247097 p.Pro195His missense_variant 0.13
aftB 4267868 c.969G>A synonymous_variant 0.13
ubiA 4269776 p.Ala20Thr missense_variant 0.12
whiB6 4338595 c.-75delG upstream_gene_variant 1.0